RnoINT0144299 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7230697-7231489:-
Coord C1 exon
chr16:7231406-7231489
Coord A exon
chr16:7230893-7231405
Coord C2 exon
chr16:7230697-7230892
Length
513 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGC
5' ss Score
5.28
3' ss Seq
CCATTGCCCTGCCCCTACAGGTG
3' ss Score
11.02
Exon sequences
Seq C1 exon
GACACACCAAGGAAGAGCTGTGTCTACAGATCTGGGTTATCTTTCTCCCGGGGCTGTTCCTACACATGTGCCAAGAAGATCCAG
Seq A exon
GTTCGCTCTGAGATGCCCCCCATCAAAGCTTCACTGCGGGAGGAGAGGGCAGAGGAGCCAACCCCCCCCACCCCGAGGAAGAGTTTAGACTGACTTCAAGGGCAGAGACGCTGAGCCTCCAGCAAGACAGCAAAACAAGGACCTTAGGGATGTCCCGAGTCAGAGGGCTACCATTGGTCCTGTGTCTAACCCCTGGGGAATGGGGATGGGAGAGAGATACAGGGTCACATCCCAGAGCTGCCAACATCAGTCAAAGCCAGTGGCAGTAACCAGGTTTCCTGCCCCGCCCCCCATGCAGTCCGTGCAGTCACAGCCCTCTCTGTCTGAGCCTACCCCCACCCGGAAGGGTTGTAGAAGGCACCCTCCACAGCTGGTGGTTCTGTCTACCCTCCATTCCAAGTTGCTCCGCCCTGTGTCTGTGTGTCCCTCAGATGTTGTCACCTCTCCCTGGATAGCGACATCAGTCCTGGCCTGGGCCTCTCTCCTCCCCTTCCCATTGCCCTGCCCCTACAG
Seq C2 exon
GTGCCCGACTGCTGCCCAGGCTTCTTTGGCACCCTCTGTGAGCCATGCCCAGGGGGTCTAGGTGGGGTGTGCTCAGGCCATGGGCAGTGCCAAGACAGGTTCCTGGGCAATGGGGAATGTCGCTGCCAAGAGGGATTCCATGGAACGGCCTGTGAGATGTGTGAGCTGGGCCGCTATGGGCCCACCTGTTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACACCAAGGAAGAGCTGT
R:
CCAGAACAGGTGGGCCCATAG
Band lengths:
278-791
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]