MmuINT0153377 @ mm9
Intron Retention
Gene
ENSMUSG00000042286 | Stab1
Description
stabilin 1 [Source:MGI Symbol;Acc:MGI:2178742]
Coordinates
chr14:31953995-31954361:-
Coord C1 exon
chr14:31954217-31954361
Coord A exon
chr14:31954129-31954216
Coord C2 exon
chr14:31953995-31954128
Length
88 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGC
5' ss Score
3.55
3' ss Seq
CACCCCCTTTCTTCCTGCAGAAA
3' ss Score
12.21
Exon sequences
Seq C1 exon
AACACACGGCGCTGTGAATGCCACGTAGGCTACGTGGGTGATGGGCTGCAGTGTCTAGAGGAGCTTGAACCCCCTGTGGACAGATGCTTGGGAGGATCATCACCTTGCCACACTGATGCTTTGTGCACTGACCTACATTTCCAGG
Seq A exon
GTGTGCTTGCTTACCCAGTCCCGACCCCACTGCATTATCCCCGGCTACTCTGGTATTTATTAATCACACACCCCCTTTCTTCCTGCAG
Seq C2 exon
AAAAACAGGCTGGTGTCTTCCACATCCAGGCCACCAGTGGCCCTTATGGTCTGACCTTCTCAGAGGCCAAGGAAGCGTGTGAGGGCCAGGGAGCCGTCCTTGCTTCACTCCCTCAACTCTCTGCCGCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042286-Stab1:NM_138672:60
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(44.7=34.7)
A:
NA
C2:
PF0019312=Xlink=PU(43.6=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGGCTGCAGTGTCTAGA
R:
TCCTTGGCCTCTGAGAAGGTC
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: