RnoINT0144325 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7222453-7222818:-
Coord C1 exon
chr16:7222674-7222818
Coord A exon
chr16:7222587-7222673
Coord C2 exon
chr16:7222453-7222586
Length
87 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGC
5' ss Score
3.55
3' ss Seq
CACCTTCTTTCTTTCTGCAGAAA
3' ss Score
11.78
Exon sequences
Seq C1 exon
AACACGAGGCGCTGTGAGTGCCATACCGGCTACGTGGGTGATGGGCTGCAGTGTCTGGAGGAGCTTGAACCCCCTGTGGACCGATGCCTGGCAGAGTCCTCACCGTGCCACACAGATGCTTTGTGCACAGACCTACATTTCCAGG
Seq A exon
GTGTGCTTGCTTACCTACCCCCGTCCCACCGCGGCATCCCTGGCTAGTTACTGTCCTGTCAGTCGCACACCTTCTTTCTTTCTGCAG
Seq C2 exon
AAAAACAGGCTGGTGTCTTCCACATCCAGGCCACCAGTGGCCCTTATGGCTTGACCTTCTCAGAGGCCAAGGAAGCCTGTGAGGACCAGGGAGCCGACCTTGCTTCCCTCCCTCAACTCTCTGCGGCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(44.7=34.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTGGAGGAGCTTGAACC
R:
TCCTTGGCCTCTGAGAAGGTC
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]