MmuINT0153454 @ mm10
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86969183-86969873:-
Coord C1 exon
chr10:86969748-86969873
Coord A exon
chr10:86969380-86969747
Coord C2 exon
chr10:86969183-86969379
Length
368 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
TCCCCTCATTGTCTCTCAAGCCA
3' ss Score
6
Exon sequences
Seq C1 exon
CCATCCCTGAGTGTGCAGCCTTGCTCTGCCCAGAAAACTCCAGATGCTCACCTTCCAGCAAAGACGAAACCAAACTCCAGTGCAAATGCCTTCCCAGTTACAAAGGGGACGGCCAGACCTGCAAGC
Seq A exon
GTGAGTGGAACCCCACCCTGTTTGTGTTTCTGTGTGATCTACAAAATCCTGGGGTAGAAAGTCTAGTCTTGGAAGCATGGCAAATCCCCTTCTGTTATCAAGCACACATAAGCATTATATTACCACGGTATGCGGAATTACAATTTCTGGCGGTTCCTTTGTGAAATCAGTTTGGTGGAGCAGGGTGGCCAGATGGGATGAAAGTGTGTGTTCCCATCTGAATGCTACTGCCTTTGTGCCTGTGATGCATGTGAGTCATAGTTCTCTGGCGATGTTTCTCTCTCACTCTCTTGCTCTCTTGTTCTCTCGCTCTCTCACTCTAATTTCTGAGAACACTAACCACCTCTCTCCCCTCATTGTCTCTCAAG
Seq C2 exon
CCATCAACCCATGTTTAAAAAACGTCTGCCACCCTCACGCAAGTTGTTCCTACCTGGGACCAAATCGGCACAGTTGTGTATGCCAAAAAGGCTACCAAGGAGATGGTCAAGTGTGTCTGCCAGTGGACCCCTGCCAAACCAGCTATGGAAACTGCCCTACAAAGTCTACGGTGTGCAGATATGATGGGCCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459:ENSMUST00000035288:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=79.1)
A:
NA
C2:
PF129472=EGF_3=WD(100=53.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTGAGTGTGCAGCCTT
R:
TCCAGGCCCATCATATCTGCA
Band lengths:
318-686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types