MmuINT0154672 @ mm9
Intron Retention
Gene
ENSMUSG00000026797 | Stxbp1
Description
syntaxin binding protein 1 [Source:MGI Symbol;Acc:MGI:107363]
Coordinates
chr2:32673947-32675430:-
Coord C1 exon
chr2:32675354-32675430
Coord A exon
chr2:32674026-32675353
Coord C2 exon
chr2:32673947-32674025
Length
1328 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CCCTTCCCCCCTATTTACAGTCT
3' ss Score
8.77
Exon sequences
Seq C1 exon
TTGTGGAGGATATCAACAAGCGCCGAGAGCCACTCCCCAGCCTGGAGGCCGTGTACCTCATCACCCCATCTGAGAAG
Seq A exon
GTAAATCCCTGAGTTCCCCGCTCAGGCTGAGACTCTGGGCTTAGGCTCTTTGGCACAGAGCGAGGGCCAGCCATTTCTAGGTTAAGCATGTTGTCAGAAGCAGGGAAAGTGGGGCTCTTATGCAGGGAGAAGTAAGGCATGCATTGAGCCTCAAGAGATGCAGTAGCGGGGCAGAGTGGACAGCCAGAGCTGGGACCCAGTGCCCCTCTCCACTGTCTAGTTCCCTCACGCTCTCCAGTAGATCCACCTCTAAGCTTTGGCGGTTTATGGCTTGTGGCTACTCAAGTTTTTCCACCTTGTTCAGATCAGATTCTTACAGGACCATTTTCCTCCTTTTTGCTGATAGTTTTTGCCAGATGTTTGGTTTTGCTGTTGTTTTTTATTTTTTTTAAAGATTTGTTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGAGTCAGATCTCATTACAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGAGTGCTCTTACCCGCTGAGCCAACTCGCCAGCCCTGTTTTTATTTTTGTCAACTTGACACAAGTTAATCTGGGAAAAGGAACTTTGGTTTTGGAAATGCCAGATCATCCACCAGATGATCTGTAGGCAAGTCTGTAGGGCACTTCCTTGCTTGGTGACTGATGTGAGAGGCCCAGCCCAGTGTGGCCAGTGCCACTCCTAGGCCCAAGTGGTCCTGGGTAGTATGTGCTTTCAAAAATAAGCTGAGCGAGAGAGCAAGACAGTCAGCAGTGCTCCTCTGTAGCATCTGCCTAAGCTCCTGCCTCAGGTGTCTGCCCTGCCTTCCCTCAGCAATAGACAGTGATATAGGACTGTGAGCTGACGTAGGCCCTTCCCTTTCCAAGTTGCTTTTGGTCACAGTGTTTAGCTCAGCAATAGAAACCCCAAGGGCTTATTTATTTATTTATTTTTAAAATCCCCTGGTCTTCACATATTGCCTTCACTTTCAAAATCTGGTCTTCAGGTAAGTTTCTGCCAGAACATCCCTATGAATCTTCTCGAAGGTTCTGAACAGTTTTGTGAGTCCAGGTTCCAGTGGCACTGACACTGCCATTCTGGAGTGAACCACATTCTGGAGTAATCTTACCTTTAAGTGCTCAGAGCTGGTTGTGACTAAACACCAGAAGTACTAGAGACACACACTGGAAACCATTGTTGTAGTACAAGCAGCCCAAAACCAGTGGATTTAGTCAGATTTAGGTTGCACTGGCTTCTAAAATTGAATTTAATGTCCCCCTTCCCCCCTATTTACAG
Seq C2 exon
TCTGTCCACTCTCTGATCAGTGATTTTAAGGACCCGCCGACTGCTAAATATCGGGCTGCGCATGTGTTCTTCACAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026797-Stxbp1:NM_009295:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.5=100)
A:
NA
C2:
PF0099518=Sec1=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: