MmuINT0157259 @ mm9
Intron Retention
Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:29990317-29992233:+
Coord C1 exon
chr2:29990317-29990390
Coord A exon
chr2:29990391-29992192
Coord C2 exon
chr2:29992193-29992233
Length
1802 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
TTTGCCTGCTGTGTCCACAGGCA
3' ss Score
11.26
Exon sequences
Seq C1 exon
GATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCCATTGTGTTGGAAAAGCTTCGAGAACTCAGTTTTAGTG
Seq A exon
GTAAGATGCACTTTTACTCAGGGTTTCCCTGGAAACCTGCCTGCCGGCAGAAAGCTGGCCCTTAGCTGGGGGGGGGGGGTGATCCCCCAAATCCCTTGAAGTGGCCTGAAGACTGCACCGGTGGTAACCCTTTGTGCCTAGGGAAGGCCTCTCAGCATTTCTCAGCTCGTTTCTTGAGTTAAGGAAGTTGCAGGGTGGTTCCCGGGTTCTCTACTTGGCTGTGGATCAGAGCTGAGAGTGACCTTTGGTTAGTGTTAAAACTCAAGCCGTAGAGCACCAATTTTAAGGAATTGAACTTCCACCACATTTGACTTTGCCCCCCACATGGTTAATGTTCCAGCACAGCAATAGCTGGATTTTTACCCCGTCTGTAAAAACATCCCAAGATGTTTGTAGAGCTCCTGTGGTACTGCCTAGTAACTTTTCAAAGAAAGAATTTAAGTCGCCTGTGTCGTGCAGATTGGGGTGGGGTGGGGTGGTTAATTGGCTCATTGTCAGGGAAGCCACCCTCAGAGCCATTCTTCTGAACTCCTGACAGCATTGCAGAAGTTGGCCTTCCCATTCTGGAGTGGTGTGGAGGCCCCAGAGGGGAAGCTGCCTGTGCTGATTGTGCAGAGCTCGGACTGCACATCACACCTGTCTTAATCCTGGTTGCTCTGTCTACAGATCCGTGTCTTTATCTGTAAGTGAGGACGATGCAGCTAATCCTCCATCCTTACTGGAGCTAAACTGGGAATTGAATGAAATGGTGGTTGTCTGGCACAGAGCCCTCAACAGGACCAATGTGGGGAAGCCACAGAGCCATTGCTTATGTCTAGCACAGGACACAGACACAGGGGCATCAACAAATAGATAAGCTTTTGCCTGCCTGAGAACTTAAAGTCATACTCAGGTCTTTATGTAATTCCAGTTTCTATGGGTGCTATGGAGAAACCAGAGAGCCATTGTTTATAAGCAGCACCGCGACATTAATGCCTGCCCAGCATAGTGATTCACACCTTTAATCCTAGAGCAAGAGGTAAAGGCAGGTGAATCTTTGTGAGTTCAAGGCCAGCCTGGTGGTCTACATAGTGAGTTCTAGCTCAGGCAGGGCTACATAGTGAGACCCTGTCTCAAAAAACAAAATGAAAAGAGCCTGTGGCTGGGCATATAGCTCAGTTTATAGAGCGTTTACCTAGCGCCCCACTTTCCACTCTCAGCACCCTATATATTAGACGTGATGGCAAAACCCACTTGTAATCCTGCCACTGAGGAGGCTGAGGCAGGAGGATCAGAAGTTCCGTCTCAGTTCCACAGTAACTTGGAGACCAGCTTAGGCTATATGAGACTCTGTCCCTCCCCTAAAAGAAGAGCCTGACTTTGAAAAGAATGGTTAGTTGGTAAGGGCCCTTTGAGGAAGGAATATCAAAGATGAGAAGGTTCAGAGTACAGACGCAGTTCTGGGCTGGGGACAGGGCTGTAGACAGTATAGAAGGTAGAGTTAGCATCTGCTTAGACATTTCTTTTTTTGTGGGGTGGGGGGTTCGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTAGCATCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCGTATGCCACCATGCCCGGCTTGCTTAGACATTTCTTTGGTAGAGAATGGTTCCTGAAGTGTTTCCTGCCCACTCCACTCCCTGCCAGCTGGCTCCAAGGCATAGAGGTCTGGGGGGTTCTGGAACTCTGGCTTGGGGTGACCTTTGCCTGCTGTGTCCACAG
Seq C2 exon
GCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678-Tbc1d13:NM_146252:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: