HsaINT0163989 @ hg19
Intron Retention
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family, member 13 [Source:HGNC Symbol;Acc:25571]
Coordinates
chr9:131550613-131553054:+
Coord C1 exon
chr9:131550613-131550686
Coord A exon
chr9:131550687-131553013
Coord C2 exon
chr9:131553014-131553054
Length
2327 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
TTTGCCTGCTGTGTCCACAGGCA
3' ss Score
11.26
Exon sequences
Seq C1 exon
AATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCAATTGCATTGGAAAAGCTGCGGGAACTCAGCTTTAGTG
Seq A exon
GTAAGAAGCCATTCTGTATTTTCACGGTTTCCCTACAGCAGCCCTGTGGCTAGAATACAGGGGGAGGCCACACCTGGTCAGCTCTGGGGCCCAGCTGCTGGGGGCTGGGGCCTTGGAAGGAAATTACACACAGACTCTTGGGGCCTTTTCCAGATTCTGTAGAGCTGAACAGGCAGTGACTGCCTTGAGCTTGGAGGGGTTTCCCAGAGGGGCAGTGGCCACACTTAGCATGCCCTAAGCTTTCCTAAGCTTTCCGCAGGAGGTGCCAGATTCCTGAGAGTAACAGGACAGGACTGAAGCCTGGAGAATGAGAGTTGGGACCTTTTGAGCCCAGGACAGTCTTTCCTCATTCCTTAGCTAGCTTCCTGTGTTGGTGAGTTTGGTTAACTGCAGGGTTGTTCCTTGTTCTCTCCCTGGCTTGGGGTCTAAGCTGCCTGAACTAAACCTTGGCTAGTGGTAAAATGGGTAGCCTTGGGACACTGACTTTAAGGAGCTGATCCTGCTGTGTTAGACTTTGCCCCAATGAGCACAAAGATAACTCTCTTTTTGCCTGTTTTAAAAAATATCCCAACGTGTTCTGCATAGCTTCTTGTCACTTTTTTGCCCTTGTAACTTTGCCAGCAAGAACTTCTGGCCGGGTGCCGTGGCTCATGCCTGTAATCCCAACATTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGAACAGCCTGGCCAACATGGTGAAACCTAGTCTCTACTAAAAATATAAAAAAGTAGCTGGGCTTGGTGGCACTTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAAAATCACTTGAACCTGGGAATTGCAGTGAGCCGAGATTGCGCCATTGCACTCCAGCCTGGGCGACAAGAGTGAAGCTCCATCTCAAAAAAAAAAAAAAAAAAAAGAACTTCTTATATTGTCCCTGTCATCCTCATATAGATTCTGAAGTGGAGGTATTCACTCATGTTCATGGTACCAGGGATACTACAGCAGCAACTGCGGTAGTGAGCTTCCTGATCTTATTGCAGGATAACTTTGTCTTTCTGTTTAGGAGTGAAATATAGGCCCCAAAGGAGAGGCAGTCAGTGTTAGTAGTTAAGAGTTTTACAGATAAGTTTCCTTCTTACGACAATTACGTTAATCTTCCCTACTTACTGGGGTAATAATGAAGATTAAATGAAATAATATCTGTAAAGCACAAAATACTTAGCATTCGTAGCTTAGTTTATATTCCACAAATATGTATGGAATATCTTCTATGTGCAGTGCTCTGTGCTATGCACTGGGAATAATAGATGTGGTTTTTGTCCTTCTGGGGCTTACCCAGTAGTAGGGGTTACAGACGTTAAGAAAATACACCATATATATATATATATATATAATAATTCCACTTATGACAGATGCTATGAAATAGTCACAGAGCCATTATTGCTTATAACAGGGGGAACTGACCTGAATTAGGATGACATGGTGGTGGTAAAGGCTGCTCCTGAGGAAGGAATATCAAGGATGAGAAGGTGTTATCCTCAAAAGAACATTTCAGGCCGGGCATGGTGGCTCACACCTGTAATCTCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGAGTGGTGGCACACATCTGTAATCCCAGCTACTTGCAAGGCTGAGGCAGAAGAATTAGTTAAACCGGGGAGGCGGAGGTTGCAGTGAGCAGAAATCACGCCATTGCACTCCAGCCTGGGCAACAGAGCAAGACTTTGTCTCCAAAAAAAAAAAAAAAAAAATTAGCATCCAGTCTAGGCTGGGTATGGTGGCTCACGCCTGTAATCCTAACAGTTTGGGAGGCCGAAGTGGGGGGATCACCTGAGGTCAGGAGTTCAAGCCCAGCCTAGCCAACATGGTGAAACCTTGTCTCTACTAAAAATACAAAAATTAGCTGAGCACAGTGGCGCGTGCCTGTAATCCCAGCTACCTGGGAGGCTGAGGCTGGAGAATCGCTGGAACTCGGGAGGCGGAGGCTGCAGTGAGCCGAGATTGCGCCACTTCACTCCAGCCTAGGTGTTAGAGGGAGACTCCATCTCAAAAAAAAGAAACCATCCAATCTAGTCATCTTTCTTGGGGAAATGATTCTTGAAGAAGTACTTCTTGCCCACTCTACTCCCCGCCAGTTGGCTCCACGGTGAAGGGCTGGGGGTTCTGGGACTCTGGCCTGGGGCATGACCTTTGCCTGCTGTGTCCACAG
Seq C2 exon
GCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021-TBC1D13:NM_018201:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(7.3=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)