HsaEX0063768 @ hg19
Exon Skipping
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family, member 13 [Source:HGNC Symbol;Acc:25571]
Coordinates
chr9:131550613-131553720:+
Coord C1 exon
chr9:131550613-131550686
Coord A exon
chr9:131553014-131553054
Coord C2 exon
chr9:131553659-131553720
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTGCTGTGTCCACAGGCA
3' ss Score
11.26
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCAATTGCATTGGAAAAGCTGCGGGAACTCAGCTTTAGTG
Seq A exon
GCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAG
Seq C2 exon
ATTCTCTTGAACTACCTTCCCTTGGAGAGAGCCTCATGGACCTCCATCCTGGCCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0056613=RabGAP-TBC=PU(7.3=57.1)
C2:
PF0056613=RabGAP-TBC=FE(18.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGATTTCCAGGATGTCC
R:
CTCTGCTTGGCCAGGATGGAG
Band lengths:
134-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)