HsaEX0063768 @ hg38
Exon Skipping
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family member 13 [Source:HGNC Symbol;Acc:HGNC:25571]
Coordinates
chr9:128788334-128791441:+
Coord C1 exon
chr9:128788334-128788407
Coord A exon
chr9:128790735-128790775
Coord C2 exon
chr9:128791380-128791441
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTGCTGTGTCCACAGGCA
3' ss Score
11.26
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCAATTGCATTGGAAAAGCTGCGGGAACTCAGCTTTAGTG
Seq A exon
GCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAG
Seq C2 exon
ATTCTCTTGAACTACCTTCCCTTGGAGAGAGCCTCATGGACCTCCATCCTGGCCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021_MULTIEX1-2/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGATTTCCAGGATGTCC
R:
CTCTGCTTGGCCAGGATGGAG
Band lengths:
134-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development