GgaEX0006329 @ galGal3
Exon Skipping
Gene
ENSGALG00000004645 | TBC1D13
Description
NA
Coordinates
chr17:5894016-5894726:+
Coord C1 exon
chr17:5894016-5894089
Coord A exon
chr17:5894321-5894361
Coord C2 exon
chr17:5894665-5894726
Length
41 bp
Sequences
Splice sites
3' ss Seq
GCGTCTCTGCTGTCCCGCAGGAA
3' ss Score
10.86
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GATCGCGGATTTCCAGGAGGTGCTCGGCGAACCTACGGTGGCTCTGGACAAGCTTCGCGATCTCTGCTTCAGCG
Seq A exon
GAATCCCGTTTGACGGAGGGCTGCGCTGCCTCTGCTGGAAG
Seq C2 exon
ATCCTGCTGAACTACCTCCCCTTAGAGAGGGCCCTATGGAGCTCTTTGCTGAAGAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004645-'2-3,'2-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGCGGATTTCCAGGAGGT
R:
AAAGAGCTCCATAGGGCCCTC
Band lengths:
121-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]