MmuINT0157420 @ mm10
Intron Retention
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24182450-24182849:-
Coord C1 exon
chr17:24182786-24182849
Coord A exon
chr17:24182546-24182785
Coord C2 exon
chr17:24182450-24182545
Length
240 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCACGCAGTTCCCTCCTCAGGTC
3' ss Score
7.5
Exon sequences
Seq C1 exon
GTTCTATTTCCAGTGTGAAGGACATGAGCCCACCCTCCTGCTCATCAAGACCACTCAAAAGGAG
Seq A exon
GTGAGGAGCCTGGCTCACTAAGCTGGTACCAAGTCCTGAGTGTGCCACAGGGGACGACAGAAGTGACCCAGAGGGTTCACTTCCCCGAACTCAGCCCTCTCCCATACCGTTTTTGCCTTCAGTGGTAGCAAAGAATGCAGGCTACACCAGTCCTAAGCTGAGACTTGGTCACTCAGCACACCGGAACAGGAGGGTGCTCCTGAGGGCAGAAGGCACAGTCTCACGCAGTTCCCTCCTCAG
Seq C2 exon
GTCTGTGGGGCTTACCTGTCAACAGACTGGAGCGAGAGGACTAAATTCGGAGGCAAGCTGGGCTTCTTTGGGACTGGAGAATGCTTTGTTTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473:ENSMUST00000168410:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(11.1=100)
A:
NA
C2:
PF0753411=TLD=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTATTTCCAGTGTGAAGGACA
R:
AAAACAAAGCATTCTCCAGTCCCA
Band lengths:
156-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types