RnoINT0148081 @ rn6
Intron Retention
Gene
ENSRNOG00000052204 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:RGD Symbol;Acc:1306143]
Coordinates
chr10:13554820-13555240:-
Coord C1 exon
chr10:13555177-13555240
Coord A exon
chr10:13554916-13555176
Coord C2 exon
chr10:13554820-13554915
Length
261 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCACCCAGTTCCCTCCTCAGGTT
3' ss Score
7.63
Exon sequences
Seq C1 exon
GTTCTATTTCCAGTGCGAAGGACATGAGCCCACACTCCTGCTCATCAAGACCACTCAAAAGGAG
Seq A exon
GTGAGGAGCCTGCTCACTGCGCTGGTGCCGAGTCCCGGTGTGGGTATGGCCCTGCGTGGAGCTTGAAAGCCACAGGGGAAGACAAAAGTGACCCAGAGGGTTCACTTCCCTGAACTCCGCCCTCTCCCACACCGTTTTCGCCCTCAGTGGTGGAAGAATGCAGGATACAGCAGTCCTGAGCTGAGGCTTGGTCACTCAGCACACCAGACAGGAGGTGCTGCTGGGGGCGGAAGGCACGGTCTCACCCAGTTCCCTCCTCAG
Seq C2 exon
GTTTGTGGGGCTTACCTGTCAACAGACTGGAGTGAGCGGAATAAGTTCGGAGGCAAGCTGAGCTTCTTTGGGACTGGAGAATGCTTTGTTTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052204:ENSRNOT00000081995:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(11.1=100)
A:
NA
C2:
PF0753411=TLD=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTATTTCCAGTGCGAAGGA
R:
AAAACAAAGCATTCTCCAGTCCCA
Band lengths:
156-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]