MmuINT0158286 @ mm10
Intron Retention
Gene
ENSMUSG00000001750 | Tcirg1
Description
T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 [Source:MGI Symbol;Acc:MGI:1350931]
Coordinates
chr19:3903046-3903428:-
Coord C1 exon
chr19:3903340-3903428
Coord A exon
chr19:3903173-3903339
Coord C2 exon
chr19:3903046-3903172
Length
167 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GCCTCCAGCCCTGTTGGCAGTTT
3' ss Score
1.67
Exon sequences
Seq C1 exon
GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA
Seq A exon
GTGAGTCGGGGCAGTTTGTCTTTTCTGGACAGCCTTAAGGCACTGGCCAAAGAAGGGGACCCGATGGCCCCTGAGTCTCTGTATGTTGTGTTTGGGGGTTCCCCACGAGTGCTTCCTGTGAGGTGAGTTGGGAGGAGGCTGCAGCCCGCCTCCAGCCCTGTTGGCAG
Seq C2 exon
TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001750:ENSMUST00000001801:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(2.7=83.3)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(22.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCTGACCATACTGAAGG
R:
CTCCAGCTGCCCCTCAGT
Band lengths:
202-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types