HsaINT0165067 @ hg38
Intron Retention
Gene
ENSG00000110719 | TCIRG1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr11:68042946-68043497:+
Coord C1 exon
chr11:68042946-68043031
Coord A exon
chr11:68043032-68043370
Coord C2 exon
chr11:68043371-68043497
Length
339 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCCAGCCCCGTGGCCGCCAGCTT
3' ss Score
2.27
Exon sequences
Seq C1 exon
CTGGCAGCCGCCCACACAGATGGGGCCTCAGAGAGGACGCCCCTGCTCCAGGCCCCCGGGGGGCCGCACCAGGACCTGAGGGTCAA
Seq A exon
GTGAGTGAGGGATGACCTCATGCCCTTTCTGGCCAGCCCAGAACCCCTGGCCAGTCGCTGGGCTGGGCCAGGCTGAGCTCCGACTCCTTGTCCAGTGCTCTCCCCAGGCTGGCCCCGCCTCCTCCTTCAGGCCCGGAACTTCCCACAGTCCCAAGCCCTAGCCCTAGGGGGTTCTCCTCTTCTGGTCCTGCCCGGGAGGCCTCCTGCCTTCCCCTGTGGGCAGGGCCAGTGTGCCCAATTGCCCGATTGCCCGTGCTGGGCAGGGTCCTGCCCGGGGGGCCTGGTGGGGGAGGCAGGGCAGGAGGTTGGAGCAGCCCTGCCCAGCCCCGTGGCCGCCAG
Seq C2 exon
CTTTGTGGCAGGTGCCGTGGAGCCCCACAAGGCCCCTGCCCTAGAGCGCCTGCTCTGGAGGGCCTGCCGCGGCTTCCTCATTGCCAGCTTCAGGGAGCTGGAGCAGCCGCTGGAGCACCCCGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719:ENST00000265686:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(10.1=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(15.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCGCCCACACAGATG
R:
CGTCACGGGGTGCTCCAG
Band lengths:
209-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains