DreINT0161367 @ danRer10
Intron Retention
Gene
ENSDARG00000105142 | tcirg1b
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3b [Source:ZFIN;Acc:ZDB-GENE-040426-2022]
Coordinates
chr14:16498750-16499121:-
Coord C1 exon
chr14:16499026-16499121
Coord A exon
chr14:16498939-16499025
Coord C2 exon
chr14:16498750-16498938
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
CATGTTTTTCTGTGTCACTGGCC
3' ss Score
2.02
Exon sequences
Seq C1 exon
GTGTCCAGGAACCGAGACAGTCTGCGTTCTCAGTACACTCAGTTGTGTCAGTACAGAGGGGTTTTAAAGCAGACACATTCACTCACAGCCTCACAG
Seq A exon
GTAGAAATACTTTCTGTCACAATTTCTCCATTTCCACATGTGCATTAGTCAGTGTGGTTCACAAGAGCATGTTTTTCTGTGTCACTG
Seq C2 exon
GCCCCTCTGGTCTCGTTCGAGCCAATGGGCCTGGCAGAGAACAGACAGGACGTCAGGCTGAGCTTTGTGGCTGGTGTGGTTCATCCGTGGAAAGTGCCCGCTTTCGAGAGGCTGCTATGGCGTGCTTGTCGTGGTTACATCATTGTGGACTTTCATGAGATGGAAGAAAAACTCGAACATCCTCATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105142:ENSDART00000170758:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.0=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(8.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGAACCGAGACAGTCTG
R:
GATGAACCACACCAGCCACAA
Band lengths:
178-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]