MmuINT0158438 @ mm9
Intron Retention
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:125053757-125057941:+
Coord C1 exon
chr5:125053757-125053857
Coord A exon
chr5:125053858-125057744
Coord C2 exon
chr5:125057745-125057941
Length
3887 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCCTTTTATCTGTTTTTCAGGAC
3' ss Score
12.27
Exon sequences
Seq C1 exon
AGAACATGACTGTCATTCCTAACCAAGTCTATCAGCCCCTGGGTCCCTGCCCGTGTGACTTAACAGCCAAGGCCTGTGACATTCAATGCTGCTGTGACCAG
Seq A exon
GTAAGTTTTTTTTCTGTTTACCAGGTTATCTGAGAATGTCACCCCCATTAGATAGGCGACAACAGAGATTAGATTTTGCAAATCAGTTTTGTTTTGTTTTGTTTTGTTTTTTTGAGATAGGATCTCATGTAGTCCAAGTTGGCCTGGAACACTCCATGTGGTGGAGAATGGTTTTGAACTCTTGGTCCTCCTGTCTCTATCTCAGAGCTGCATATTGTGTTTAAATTGAGTATTTTCTCTTCTGGTGTTGTCTGTGTAGTTTGTGGAGAAAAGAGAAAAGTATGTCTTTGGATAAAATCACCTTAGGGAGAGCTATAGTTTGAGGGTGATTTTTAATCTTATTTTAAAATTTTAACTACATTCATTTATTTGTGTGTGTGTGTTTTGTTGTTGTTTTTGTTGTTGTTGTTGTTGTTTTGAGATAAGGTTTCTCTGTATAGCCCTGGCTGTCTTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACCGCCTAGCCTGTGAGTGTGTGTGTTATGGAGGGTTTGCTACAGTACATATGTACAGGTCAGGGGCCCTCTTGTGGGAGCTTCCAGGAATAAAACTCCAGTTATCAGGCTTGTCAGCAGACACTTTCCCATGCTGAGCCACACTGCCAGCTCTCGCTTGTTTATTGAGTAACAAGTCTCACTATGTAGTCTAGGCTCACCTCCAATTTAAGGTAGTCCTCTTGCCTCAGCTTTCCTGAGTGCCAGGATTGTAGACACAAACCACCACCCCTGGTTTATAATACATACCTTAACATTGTAAATTTTAGACAAATGATAGGCAGGTTCACTGGTATCCAGGGTCTCCCATTTCTGCAGGAATATGGTTGAATTTTGTTGTTGTTGTTGCTTTTGTTCATCTGTTTTGAGAGTCTCTATAACCTTGGTTAGCCTACAACTTGCTGTGTAGCCCAGGCTGGCCTCGAACTCACCTAGATCTGCCTGTCTCTGTCTTCTGAGTGCTGGGATTGAAGGGCAGTTGTTAGTGCTTTGAGGCGGGTTTTGCTGGCTGCGTGCTCACCGTGGGTGTGGGGTACACCCCCGGCTGGCCATGTCAGACTTGCTTGTCTTAAAGTCGGTGTGGCATACAGAGCTGTACACTTTGTTGCTTTTGTTCTGAGCTAGGGGTTCACGTGGCTGCAGGGGACCTGGCACTTGCAATCCGGCTTCTGCTTCCCAAGTGCTAGACAGACAGACAGACAGACCTATCCAATTGAACAAATCAAAACAGAGCCCTTCAGAACAAATACGTACTGTCTAATCTTGCCGTAAAATCTTGGGAGGTAAATACACACCCGTGAACTTAACCACCACTGTACAGGGGAGGCGGAGGTGGAGGGGTCAGAGGTTACAGGGCCGCCTAAGCAAACTCGCAGGTCATCGGGCAGCCATCGGTGACCCTCAAAAACCAAAGCAACACAAACAAAAACGGCCATGAGGGACACCTTTCTGCAGAGGCTTTTTTGTCACGTGCTCCCGTGGGTCTCTGCACCATCAGTAGAGTTACATAATCAGGATGGCTCCAGCCAAGCTGTACCCGGTCGGTCTATCACTAATTGCCCTTGGAGCTGGTTGTATTGTCGACTGCAGTAGCTGCCCCTCTTGGGATTCCTAAGGTAGTACTGAGTGTGGTACCACAGGCCAGCAAGCCTAGCCCTGGGAAGGAAAAGACTCAGACTGACGATTGTTGTGGTAAATATTATTTGGGGGTTTCTACCTTACCTTGGATCATTTAGTTACCAAATAAAAGACAGAAAAAAAAACCTTTATATTTATAAGAAGTCTTAAAGCAGTAAAGCTGGGCAGATATCTACCCTCTGTCTACTTCCAGTCAGTAACCCCGAGTTACTGATTGCTGTGTTCTGCCTGGACCTCTCCTATTCCAGCAGGCTGCCTCTCACCACTCTGCGCTCATGATGCACCCAGCCCTTGGAGATTTCCTTCTTCCTTCTCTCTCTTTCCCTCCCTCATGCTGCCTGCCTCAGACCCCAAGCCCAGGACCCAAATCCCCGCCTGCGTCTCTTCTGCCCAACTGTAGGCTGTGGGCATCTTTATGACCCAATCATGGAAAGCTTGAGGAGGGCAAGGTTTAGACAACCAGAGCTGGTGTGTGTGAGGACCTGCTTGTCTTGGAGCAGCCAGGTTTTGGGATACAGTATTTAGCATTTTAATACATAGCAGCAGCAGACCAAGCCACTACGGAGGCTCGCTGTGATTGGACGCTAGCCTGGTCTATGCAGTGAGAATCTCTATCGCATCAAAAGAGCGGGGCCAAGTGTAGTGGTGCACATAGATACACACACATACATGGAAGCAAAGCACGGTGCACATGAAAGAAAATAAAAATATTCCTAAAAGCAAAAAACGAGGGGTTGGAGAGATGGCTCAGTGGTTAAGCGCACTGGCTGCTCCTCCAGAGGTCCAGAGTTCAAATCCCAACGACCACATGGTGGCTCCCAACCATCTGTAATGGGATCCGGTGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTATTATACATAAAACAAAACAAAACAATAGGGAGCTCTGGTTTATGCACAGTCAGTTCATCAGAGCTACTCAGTGAGACCCTGTTTCAAAATAACAAACCAACCAAAAAGAAGTAGGTAGCAGGGCATGATGGCACTCCCCCTCTAATCTTAGGACTCAGGCGGCAGAGGCAGGGGCATCTCTCTGAATGTGAGGCTAGTAAGCGAAGTAAGCAAACCAAACATACCAAATATATTCTGTGTCAATGGCGTCTTAAACAATCCCAATTTACACTTTATGCACAATTTTAATCTTGTTTTTGAGGTACCGGGGATTGAACATGGGCCTCACTCATCCCTGCTCCCTCTGAGTAATGGGCCCAGCCCTACTCTGTTACTTTTTAAACATTTGAGACAGAGTCCTGCCAAGTAAGTAGCCCAGGCTGGTCTCGAACTTTTGATCCTCACGCCTCATCCTCCTGAGATCCTCATAGCTCTCTAGCTCTGGGCCTGGTGTGATGACATTCCCACTGAAGCTCACTCCGTCGCGGGCTGGAAGAGTCTGACTGAACTTCACTGGGGAGCTGACTAAGGGACTTTGTGATCGTGTAAGTGTAAGGAACGAGGTGTGTGTGTGTGTATGTGAGTGTGTGAGAGAGTGTGTGTGTGTTATGGAAGCTTGTATGTATATGGTGTAGGGTGTGTGTGTGTGTGCATGTATGTGTGTGAGAGTGTGTATGTGTTATGGAGGCTAGTATGTATATGGTGTAGGGTGTGTGTGAGCAGTGAGTTTGTGAGTGTGTGTGTGTGTGAGAGTGTGTGTGTTATGGAGGCTTGTATGTACATGGTGTAGGGTGTGTGTGTGTGTGATTGCTCATGTGTGCACACACCTGTGGAAGCCAGAGGATAATTAATACCTTAGGCACCATGCACCCTTTTAAATTTTTCTCTCTCACGCAACCTGCAGGCTGGGTAGGCCTTGGCAGGCTGTCTGGTGAGCCCCAGGGATCGCCCTTCTTCAGTCTCCCCAGCAGTCACAGGCCACCACACCCGGCCTTTCCATGTAGGTTCTCCAAGTGGCACTCAGGTCCTCCTGCTTGCGGTCCACGCATTTTGCCAACTGAGCCCTCTCCACAGCTCCACGGAGCTCTTCTTGCACCGCCAAGCACTTGGGGAGGAGACTAAGATGCATTGTTTTCTCGTCTATTGTGTTGCACGCTGGTGGCCTCGCAGTACATGTTGTCATGTTAGCTGGGAGCTGTGTCCAGCCTCACAGTGCGAGCTTGGGTACCCTTGTTACCCTTTTATCTGTTTTTCAG
Seq C2 exon
GACTGTCAGCCAGAAGTAAGAGAGCTGTTTGCACAGTCCTGCTTCTCCGGCGTGTTTGGAGGGCACGTCAGCCCTCCGTCCCATCATCACTGCGCTGTCAGCACTACTCACCAGACTCCTGACTGGTTTCCCCTCCTGTGTGTGCAGTCGCCACCCTCTACCTCGCCGTTCCTTGGTCACTTCTACCACGGTGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-Tctn2:NM_026486:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF077736=DUF1619=PU(6.2=50.0)
A:
NA
C2:
PF077736=DUF1619=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: