MmuINT0158782 @ mm9
Intron Retention
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42160067-42167550:-
Coord C1 exon
chr9:42166989-42167550
Coord A exon
chr9:42160267-42166988
Coord C2 exon
chr9:42160067-42160266
Length
6722 bp
Sequences
Splice sites
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
3' ss Seq
GACTGTCCCTTCTGTTCCAGCGG
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTCAACAATGAGCGGTTGTACCTGCCCCTGAAGTTAGGACAAGGGAAGATAAACATCTTTTCATTCGGCTTTCATGTGGTTGTGGAGACTGACTTTGGCCTGAAGGTCGTGTATGACTGGAAGACCTTCCTGTCCATTACCGTCCCCCGGAGCATGCAGAACGGCACCTATGGCCTCTGTGGACGCTACAATGGCAACCCCGATGATGACCTTGAGATGCCCATGGGGCTGCCTGCACTGAGTATCAACGAGTTTGGCCAGAGCTGGGTGAAGAGAGACACCTTCTGCCAGGTGGGCTGTGGGGACCGCTGCCCATCCTGTGCCAAAGTGGAAGGTTTCTCCAAAGTACAGCAGCTGTGCAGCCTGATCCCCAACCAGAATGCTGGCTTTGCCAAATGTCACAGCAAAGTCAACCCCACCTTCTTCTACAAAAACTGCCTGTTTGACTCCTGTATCGATGGGGGTGCCGTGCAGACAGCCTGCAGCTGGTTACAAAACTATGCCAGCACTTGCCAGACTCAAGGAATCGCAGTGACCGGCTGGAGGAACTACACGTCCTGTT
Seq A exon
GTGAGTTCTCCTAGTATCTCTCTCTTGCTCCTCCTTGTTTCTGATTGGTGTGGGAGGCTGGTTCCTCCAACTCCATAGAAGTGAGGGCACATTGGGAAGACTGATTTTAGGATATGCACTTTGGAACTCAGCCCCATCACCTGAAACAGAAGCTGTAACCTCCTACAGTCTTCTTTCTTTCTTTGTAGAGAGGGATCAAGACCACGGATTTGATGGGTTACCCTGGAGGATGGCATAAGACCACACATCTAAAACACAGAATATCGCACGCTGCATTTGAATTTCAACTACACAATAAAATGCTTCCCAGAGACGATGGGGGAAGAGTCAGTGGTTCTCAACCTGCCTAATGCTGCAACCCTTTAATGTGGTTCCTCGTGTTGTAGTGACCCTCAATCATCAAATTATTTTCATGGCTACTTCATAACTATATTTCTGCTACTGTTGTGAATTATAATGTAGACATCTGATATTCAGGATATCTGATATGTGACCGCTGTGAAAGGGTCATTCAACCCACAAAGGGGTTGCAACTCACAGGTTGAGAAACACTGCTCTTGAACCTAATGGGTCCATCATTACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTAGCCTCTGTGACTGAAGAACATGGCACAATATTAAAAACATTAGAAAAGGGAGTTAAGTTCATGGATTCAAGCCTCAACTCGGCCATTAAGGATCAGTGTAACCTTGACCTAACTCGCTTGCCCTTCCTGCTACTCAGCTTCTTCTCTAAGGAGCAGCCATAATGCCGCCTGAACCACTTATGCACAGAAACACTAGAAACAATTTAGGTCATTGGAATCCTAGCACACAATACATGTTAGGTGGTGGTATTATATTAAGGGCTTACAGTGGTTAAACCCACTGTTAAATTCCCTATCAGCACTATTTCATTACTTCTTTACAATAACCCTATTAGACAAGGAAAAACTGAGGATTAAAGGAATTAAGTAACTTGAAAAAGGTTAGGTAATCTCAATGGCAAGGTCAGGATTTGACTCTCACCCCCACACCCATGCACTATACTCGTGGACCACAGTATTCGCCTGCATTCAGCGTGTGCACATAGGAAAGAGTTGGTGGGGACATAAATCAGTGAGTCTTTAGTCAATCTGCCATGGCCTATTTTCCTACCCCAGCCTCATTAACCATAGCACATTTCTTTGTATAAAAGGTCTGATTGTACAAAATGGCTACAAATCAATGCTGGACGCTCAGAGCTTTAAATAAGGGGTACAGGAGGCTCCACAAAGAACAAACTCTCATTTTCATCCTGGAAAAGGGAGATTTGGGTGCAGAGCTATTGTGGTTTAATGATCAGTTGGTCTGCATTCCACACGCAGCCATTGGGTTCATGGAAACTGGGGTGGGCAGAGGAGGGAGGGGAAAGGGTCCAAGATTATATCATTCAAGTTCAGTTCTTGAGCAAGGAAGGTGGGGGACATGATGTCTGTGGGTGACTGTCCAGAAAAATTCAATCAAATGTGTGTGTGTTCGTGTGTATATATATATATCATATATATTGCATACACACACACACACACACATACACACACACACACACACACACACACACACACACACACACACACACACACACACACATGCCTTTAAAAAAGTCTGGGGCTAGAACAATGTCCAGGTCTCCTGGGACTGTCATGCTTGACTTCCTCAGAATCAGAAACTAGGTTCTTGGCAGAGAGACCTCAGCATGTTTGAGAGGAGAGCTGAGCCTGGTTCTTCTTAAGGTCTGTCACAAGGATATCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTGTCTTGCTCACTGTCTCCAATGCTCTGTGTTTGCTGAAATGGGATATGCAGGGGGCTTGGGGGACAGACAGATATAATGAATGCCAAATGCCATCGTGTCTAGCTGTGACAAACAAGGGAATGCCTTAAAGGAGTTGACAGCAACAAGAACTCTCCCCCAACTGATATCACTTATGGCCTCAGCTTTTGTCACTCATGGGAAGGAAAAAGAATTGAGTTAAGGATCCCTATGACCTCCCCCCACCCATCTAAGGACAAAGTTACTCTGTGACGGAGCTTGATTAGTGATAGAAGATATGGAGATGACTTCTCCTTTCTTCCCGTCTTCCATACCAGTAATCTGGTCCTCTTTCATCTTCCAAGTTCTGCCAAAGCCCTGGCTGTGTCCTATGCACATGGTTAACCTAGCCATGGAGACTTTATTCATGGCACTGAGACTCAAGTCTTCCCCCCTCCACCCCAGCCTTGGTTACCACCTCTGCTGTAGACTAGCTGCCCCCAGCTTCTCCCCAGCTGACACACTACAGGCAACAGGCGACTGAGAAAGGTTCCCAGTGCAGAGTGGCTTATATTTTCCTTTTTTGGCATTTTGAAACAGGGATAAAGATCCAAGAGACAGGGTAGGTGGGAGGATGGTGGTTGTGAGTAATAAAGAAGAAGCTAAAAACTAGAGAACAAACTGAAGATGGCACGTGGCCAGGGGAGGGGACAAGGCACGGCTGCAGGTGGCTTAGCTCTCCCATTTGAGACATTCAGAAGAAAGCCTGGCCTGACGAGGTCCTTTGTATCTTAGGTGACTTTGACCTCTGGAAAGTTGAGGTCATCTAAAACCCAATTTATTAGTCACGTGTTAGGTGTAAGAATGGTACTTTCAGGGAGGGAAGGGGGTTAAACCAAATTGCCCATTCGATGTGTGCTTTATTGGTAACAAGGTGGAATGCCATTTTTTTTCTCAACAATATTGGCTGTTCTTATCAATGGGATAATTTATTAGTCAATTACCTTATTTGTAAACGCTCTGAAAACCTCTCTACCCACGTTGAACAAATGGCCTTGGAGGAAAAAAAACGAGAGATAAATTGTCTTAATTACTAAAACCCCACCTAAAATCCCATCAGCCAAGGCTGCTGTGCTAATTTCAGTCACTCCATGAGGGACTTGGAGCAGCAGATATTGAAAACATAGTAGAAGGCACAGATCACAGCTACGTGCTCTATAGCTCTCCCTGTCTGCCTGGCCCTGTTCAGGATGTAGCATGGGGACTTGTGGATCCCTTCTTGAGGGGGAGTGGAGAAGGGGGTAAAAGCCCATTCAGAGAACAATCTGGGGAAGTGGGAAGTGTAGAGAGAGAGAGAGAGAGAATTGCCCTACTGGGCAGCAAGAACTGCTGTCTGTCTGACCCATCTCTCAGTGCAGAGGACCAGTCAAAATTGATTAGCATCATTGTTTTGGATTGCTCTTCTATCAGATCTTAGCAACTAAGGATTTGTTTTACCTATTTCCTTGCGAACCCAACAAATGCTTGTTGATTAGTTTTTAAAAATGAATTGCTACAACTATTCCTATCATCAGTGATGTTGTCAAAACCATGGAAGCCCCAAGTACTTTGTTATTCATAGAGAGGAGAGGAGGGGAGGGGAGGGGAGGGGAGGAGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGGGAAGGATGAGCTAACAGCTTACAAACTTCTCATGGGAAGAGAGCTTCAATGTCACCCCCACTTTATAGGGGAGAAAATGAGTTCAGAGAGCATAAGGAACTTGTGCAAGGTGACCCTGCTAGTTAATGGCAGAGCCAGGGTTCGTAGCCAGGTCACTCTGACTCCAGAGGACTTGTCCATCCCATCCCAATACATTCCACTCCATTGCTTTTCAGGGGATCTGTGTGCCCTGCAGTCCACACAGGCAGTTTTAAATAAGTCTACTGGCCTCAGCAAGAGCCATGTTCTAAACAGTCATCACTCTCCAGCTCTCTGAGGCTGGAGAATTTAGAGGGGGAGAGAAGCCATAAATCAGTGCTGTTTGGATGCCAGAGAAGAATCCAAAGTCTTCCCAGATATGAAAATGACTACATTTTACTACTAATGCTTGATATCAATAGTATTAATCAATTAATTAATACTCAACAGTCTCACAGGAACAAGTTAGCGAGCACAAGATAACAAGAACGAAAGAATGAAGAGAAGGGAAGCTGTAGAAAGATGAACATGTCAACAGAAAAAAAGAAAAGAAGAGAAACCCTGACCAGCTAACACAGTGGTTCTCAACCTGGGGGTCACGACCCCCTGAGCTCACACATTAGATGCCCTGTGTATCAGACACTGATAGTATGATTTATAACAGCAGCAAAATTGTAGTTACAAAGATGCAACAAAATAATTTTATGGTTTTGCGGTCACCACAACATGCAACACTGTGTTAAAGGGTCACAGCATTAGGAAGGTTGAGAACCTCGGATCCTAGTCATTAGAAATCGTCAACCTGGTTTCAAATAACTTGAGGAAAAGGAAGATTTATATAATACATAGTGAAGAGATGTTAGGAAAATTCTCTGGGGTGGGGGGAAATAAGAGTTTAGTCTTTTCCTCATTTCCAGTACAAAATAAAATCCAGACTGAAAAAAGATTAAACATTTAAAAATTGAATTATAAAAGTACTATAACAAAACAAAGGAGTTTGCCTTTCCCCCAATCACACACACACACACACACACACACACACACACACACACACACACACACACACACAAGCCTATAAGCCTATTAAGGAAAACTAGATAAATTTGACCTCATAAATTTTTTTACATCTCTACATGGCAAAAAAAAATTAAAAAAACACAATTTTTTAAAAGAAGAAGCAAAGTCAGAGACAAGTGATGAATACTTTGTAATTCATGTGACACACAAAAGTGTTTTTAATTTATAAAGAGCACTTACAGTCTAATAAGAGGAAACTTCAACAACACAGTGTGTTATGGATGAGAAAAGACAGTTCGCAGGAGACAGAAAAATGATTATAAACAAATGAAATGATAGCAAGGCTCAAAGAAATGCAAAGTAAATGCACAGACGGCAGAAAGAGAGTTTCTTCTTTTACTTTTCACATTTCCAGAAGCCAAAAGTCTTGGGTTGTCATCATTGAAACCTCAGGAGACCAAATCTTCTTTGTTCTTTGGTGCAACCTTACAGGGCAGCTCAGTGGGATCTGCCAAAGACTTAACGGGCTGGAAGCATAGCTCCGTGGCAGAGTGAGGCTTGCGTTGGAGACCCAGCACTACAGTAGTAGTAGAGGTAGAAGTGGTAGTAGCAATGATGATGGTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGGGGCTGTACCTATCCTTTGGCTTAAAAATTCCACTTATAGGACGTTATTCTATAGCCTAATTTATGAGAAAAATATGCATACCATGATATTCATACAGAAGATACACACCATGAAGTGTTGTAAAGACAATAGTTCAAGACTTAATAGAAGAAATACTGTTAGGAGAAAGCAAGAGAAGGTTTGGCAAGGCATGGCACAGTTTGTAGATTATGCTCACATTCATGTGAAAATCCAAAGCTGTGGATAAGGTGCGTACACACACACACACACACACACACACACGTCTATGTGCATAGACAATGTGTGCAAGAATCCACTGGAATTTGTTAGTACTGCACCCAGGCCATCTGTATTCTCTATGACCTGAGGGTGTTATCTTTTGAACTAGACTTTAAAATATATATAAAACACTGTGGAAGTGCTTCTACAAACATACCCATGTATTACGATTCTCAGGACTATGCACTCTACAAGGTTCTATTTACCACTCCATGAACGATACCTTCCATATATTCTAGAGACATTTCCGCATAAATGGTTGTTGTGCATTTAGTATGCATTGATTAAGAGAGCAGCTGCTACAAAACTCTCAAGCAAGTCTTGCTTTAATGATTGGTTAATTTTATTGAACACTATGTGACCAGAGCTCTTCTAAGTATGCAAATCCCTATGCTGTTGGTATCTGCACTATGTACACAAAGAAGCTGAGGCTCATCGTCTAAATAGCCTGTCTGCATTTCTTACCAGAACTCAACAGTATTCACCAGTACTTTGCCTGCCTTCCATAGACACAGTTTTAGATGCATCTCAGGGCATAGAACACACTGATTCAGGTCAAGTTGCCCATGTGAACACACGCACACGTTTTCAGAGATCATGTGGCTAAGGGACCGCTGGTTTGACTAAAGGCTCTGTGCAGGTTTGGAGGGGAGGGTGAGTGGCATTTTGTAATAGGAAGAGGGCACTATCTCATGATTCTCTACGTGGGATGGAAAGAATGAGGTGTTTGGGTAAGCAGGGTGTGAAGAAGAGTATTGGTACAAATGAAGCCCGAGAGGCTGGGCTGGTATGCAAGCCTTGTCTAGCCCATGTTGGGATTCCTCAAAGCCAGTGGGTTTCACAGTGGCAGGCAGTAGAGACCGCAGAAAGCCCACACTAAGGAGAGGACAAAGATTATGGGAGGAGACTCCAGCACCTTCCCTCTGCACACAGCAGCCTGTTGTTTAAGCAATAAGGCATCAGATGACAGAGGCTCTTCATAAGCGAAGAGCATGGGTGAGCCAGCCCCACACCTCTCCCTCTCACACCCTGCCTTCTACCTCCCTGAGCAAGGATGGGAGAGAGCCATTTCCAGCTCCTTGTGACTTGACTGTCCCTTCTGTTCCAG
Seq C2 exon
CGGTTACCTGCCCCCCCAACAGCCACTATGAGAGCTGTGTGAGCGTCTGCCAGCCCCGCTGCGCAGCCATCCGCCTGAAGAGTGACTGTAATCACTACTGCGTAGAGGGCTGCCAGTGTGATGCAGGCTACGTCCTCAATGGCAAGAGCTGCATCTTGCCCCACAACTGTGGCTGCTACTCAGATGGCAAATACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705-Tecta:NM_009347:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(47.8=40.4),PF087426=C8=WD(100=40.4)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=13.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: