MmuINT0160601 @ mm9
Intron Retention
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105101675-105102975:+
Coord C1 exon
chr11:105101675-105101770
Coord A exon
chr11:105101771-105102882
Coord C2 exon
chr11:105102883-105102975
Length
1112 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GTTTGCTTTTGTCTTTGTAGTCT
3' ss Score
8.75
Exon sequences
Seq C1 exon
GCTCAACAAAACAGTCCTTCTTCTACGGGTTCTGGCAATACAGAACATTCTTGCAGCTCCCAAAAACAGATCTCCATCCAGCACAGACAGACCCAG
Seq A exon
GTAGGTGGGGACACTGTAGAGCTATTATATTCAGGAATAGACCTGACCATGTAGAAAGTCTGTAACTCTTCCCTTTACCTTTGACTAGACCCCATTGTTTAGTATTTCTGGTCCTTTGGAAGGAATTTTTAACAGGCTTTTCTTTACTGTTGTGGTAGGCATGATTTTGCTGCAGCATGGTATGAAGACAAGAGCATACATTTTGAAGGCTTCTGGGCCTAGGTGCAAATTATGACTCTACTGTTTGCATTTAATATAATGCAAAATTAGAGTAATTCCAATCACCTTAGGCAGTGGTGACAGTAGGCTTTCAATAAATGTTAATTTTAAGAAAGTAGTTTATTTCCTGTACTTTGAAAATGTTATACCAATAAAATTTCTTCCTTAAACAGTCTTGAGAAATTTTCTAACAGAGACTCTTCTAAAAATTAACATGGTGTTTCATATGCCTGTAAATCCCAGCAGTTTGAAGACTAAGGCAAGAGGATCTTGGTTTCAAGGCCAGCTCAGACTGTCCCAGGAAAGTAAGGAAATGAAAAAAAAAAAAAAATGGAAATTATATTTTAAAAGGATAGTAGATCTTTGCTCCAACTGTGTTTTTCTAAGTTAGGTTATTGGGTGTTCTTGTCTGTGTTCCTCTCAAAACAGGATGCTTGTCAGTTAAGAACTTTATAAAAGATTTTTATTTTATTGGAACCACCAGTGTTTGGATATTGAAGAATCCTAGATAGTTGAGCACTCAGAACTTTTTTCCCTTTCTACTTTCTTTCTGTTTCCACTAGGGGGCACACTTGTTCCTCAAAACTGCATCCTGTCACCTAAAATCCTTTCTAGTCAAATCTGATTTCAGTTCTATGGTGTTGCATCATTTTTATTCAATGTACAGTATTGTGAGAATTTGTATAGTTAATTCCAGAAGTAATGTTTTTGCAGTACAAGTGTTGTGGATGTGGCTAAGGTTTGGAGGATGGGATGAGGAAAGCAGATTCATTTCCTGAGTTACCTGTGCAGCTATTGATGTTAGCAAGTGCTGCTTCCAAAAAGCAAGGAAAATGTGATGGCATGTAATACTTTGTGACTAATTCTAAATTTGTTTGCTTTTGTCTTTGTAG
Seq C2 exon
TCTGACCTCACAATAGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTAGAGAAGAAGGAAGGAAGAATAGATGATTTATTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694-Tlk2:NM_001112705:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.934 A=NA C2=0.554
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: