MmuINT0160601 @ mm10
Intron Retention
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105240361-105241661:+
Coord C1 exon
chr11:105240361-105240456
Coord A exon
chr11:105240457-105241568
Coord C2 exon
chr11:105241569-105241661
Length
1112 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GTTTGCTTTTGTCTTTGTAGTCT
3' ss Score
8.75
Exon sequences
Seq C1 exon
GCTCAACAAAACAGTCCTTCTTCTACGGGTTCTGGCAATACAGAACATTCTTGCAGCTCCCAAAAACAGATCTCCATCCAGCACAGACAGACCCAG
Seq A exon
GTAGGTGGGGACACTGTAGAGCTATTATATTCAGGAATAGACCTGACCATGTAGAAAGTCTGTAACTCTTCCCTTTACCTTTGACTAGACCCCATTGTTTAGTATTTCTGGTCCTTTGGAAGGAATTTTTAACAGGCTTTTCTTTACTGTTGTGGTAGGCATGATTTTGCTGCAGCATGGTATGAAGACAAGAGCATACATTTTGAAGGCTTCTGGGCCTAGGTGCAAATTATGACTCTACTGTTTGCATTTAATATAATGCAAAATTAGAGTAATTCCAATCACCTTAGGCAGTGGTGACAGTAGGCTTTCAATAAATGTTAATTTTAAGAAAGTAGTTTATTTCCTGTACTTTGAAAATGTTATACCAATAAAATTTCTTCCTTAAACAGTCTTGAGAAATTTTCTAACAGAGACTCTTCTAAAAATTAACATGGTGTTTCATATGCCTGTAAATCCCAGCAGTTTGAAGACTAAGGCAAGAGGATCTTGGTTTCAAGGCCAGCTCAGACTGTCCCAGGAAAGTAAGGAAATGAAAAAAAAAAAAAAATGGAAATTATATTTTAAAAGGATAGTAGATCTTTGCTCCAACTGTGTTTTTCTAAGTTAGGTTATTGGGTGTTCTTGTCTGTGTTCCTCTCAAAACAGGATGCTTGTCAGTTAAGAACTTTATAAAAGATTTTTATTTTATTGGAACCACCAGTGTTTGGATATTGAAGAATCCTAGATAGTTGAGCACTCAGAACTTTTTTCCCTTTCTACTTTCTTTCTGTTTCCACTAGGGGGCACACTTGTTCCTCAAAACTGCATCCTGTCACCTAAAATCCTTTCTAGTCAAATCTGATTTCAGTTCTATGGTGTTGCATCATTTTTATTCAATGTACAGTATTGTGAGAATTTGTATAGTTAATTCCAGAAGTAATGTTTTTGCAGTACAAGTGTTGTGGATGTGGCTAAGGTTTGGAGGATGGGATGAGGAAAGCAGATTCATTTCCTGAGTTACCTGTGCAGCTATTGATGTTAGCAAGTGCTGCTTCCAAAAAGCAAGGAAAATGTGATGGCATGTAATACTTTGTGACTAATTCTAAATTTGTTTGCTTTTGTCTTTGTAG
Seq C2 exon
TCTGACCTCACAATAGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTAGAGAAGAAGGAAGGAAGAATAGATGATTTATTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694:ENSMUST00000106939:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=0.560
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types