RnoINT0151414 @ rn6
Intron Retention
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93464374-93465700:+
Coord C1 exon
chr10:93464374-93464469
Coord A exon
chr10:93464470-93465607
Coord C2 exon
chr10:93465608-93465700
Length
1138 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GTGTACTTTTGTCTTTGTAGTCT
3' ss Score
8.28
Exon sequences
Seq C1 exon
GCTCAACAAAACAGCCCTTCGTCCACGGGGTCTGGCAATACAGAACATTCTTGCAGCTCCCAGAAACAGATCTCCATCCAGCACAGGCAGACCCAG
Seq A exon
GTAGGTGGGGGCCCTGCAGAGCTTCACTCAGGAGTAGGCCTGACCTAACCATGTAGAAAGTCTGACTCTCCCCTTTGACTATACCCATTGTTAGTCTCTTCAGAACTTGCATTGTGAGGAATTCTGGTCCTTTGGAAAGAATTTTAACAGGCTTTTCTTCACCTTTGTGGTATGTAGTAGGCATGATTTTGCTTTGTCATGGTATGGAGACAAGAGCACGAAGTTTGAAGGCCTCTGGGCCTAGGTGCAAATTCTGGCTCTGTTGTTTACATTTAATATAATGCAAAATTAGGTGAGTGATTCCAGTCACCTTAGGCAGTGACAGGAGGCTTTCAATAAATGTTAATTTTAAAGAAATAGTTTATTTCCTCCTGTATTTTGAGAATGTTATACCAACAAAATTTCTTCTTAAACAGTCTTCAGAAATGTTCTAATGTAGAGACTATTCTAAACATTAGCATAGTGTTTCTTTCATATGCCTGTAAATCCCAGCAATGGGGAGACTAAGGCAAGAGGATCTTGATTTCAGGGCCAGCTCAGGCTGTCCCCAGAAAAGTAAGGAAAGGAAAAAGAAAAAAAGGAAATTATATTTGAAAAGGATAGTAGATCTTGGCTCCGATTGTATTTTTCTAAGTTAGTTTATTGGGTATTCTTGTCTGTGTTCCCCTCAACACAGGATGCTTGTCAGTTAAGAACTAGATAAGAAATTTTTATTTTGTCGGAGCCACTAGTGTTTGGACATGGAAGAGCCTAGATAGTTGAGCACTCAGGACTTTTCTGCTTTTCCACTTTCTTTCTGTTTCCACTAGGGGGCACGCTTGTTCCTCGAAACTTTGCTTCCTGTCTCCCAAAATCCTTTCTAGAAAATGTGATTTCAATTCTATGGTGTCAAATAATTTTTATTCAATATACAGTATTGTGAGAATTTGTATAGTTAATTCCAAAAGTAATGTTTTTGCAGTGCAAGTTTTGTGGATGTTGCTAAGGTTTGAAGGATGGGGTGAGGAAAGTAGATTTCATTTCTGAGTTGTCTGTCCAGCTGCTCATGTTAGCCAGTGGTTCTCCAGAAAGCAGGAAAGTGTGATGGCATGTAATGTGTTGTGACTAATTCTAAATTTGTGTACTTTTGTCTTTGTAG
Seq C2 exon
TCTGACCTCACAATAGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTAGAGAAGAAGGAAGGAAGAATAGATGATTTATTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285:ENSRNOT00000066484:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.885 A=NA C2=0.548
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]