MmuINT0162728 @ mm9
Intron Retention
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:44983185-44983640:-
Coord C1 exon
chr9:44983542-44983640
Coord A exon
chr9:44983328-44983541
Coord C2 exon
chr9:44983185-44983327
Length
214 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CGTTGCTTTCAACCTCCCAGGAA
3' ss Score
7.86
Exon sequences
Seq C1 exon
GCTCAGTCAGGCCCATCTGCCTGCCCTTCTCTGATGAGGTGCTTGTCCCAGCCACACCAGTCTGGGTCATTGGATGGGGCTTTACAGAAGAAAACGGAG
Seq A exon
GTGAGTCTTAGCCTCAGAACCTCAGCTGCCTTCCATGAGGGCCTTATTACCCTCCCCAGTGGTAACAAGAAAGAAGAATATCCTTCAGAAAAGTCCACCCTGACTGACCAGGCACCAAAGTTTCCAGCAGCAAAAAGTATCGAGGGCCCAGAAAATTAACCTGGGCTGAGGGTAAAGGAGAAACTAAGGAAATACGTTGCTTTCAACCTCCCAG
Seq C2 exon
GAAAGATGTCTGACATGCTACTGCAGGCATCAGTCCAGGTCATTGACAGCACACGGTGCAATGCAGAGGATGCCTACGAAGGGGAAGTGACCGCTGAGATGCTGTGTGCAGGTACCCCACAGGGTGGCAAGGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091-Tmprss4:NM_145403:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(24.2=94.1)
A:
NA
C2:
PF0008921=Trypsin=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTCAGGCCCATCTGC
R:
AGGTGTCCTTGCCACCCTG
Band lengths:
236-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: