RnoINT0153397 @ rn6
Intron Retention
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49472429-49472879:-
Coord C1 exon
chr8:49472781-49472879
Coord A exon
chr8:49472572-49472780
Coord C2 exon
chr8:49472429-49472571
Length
209 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTATGTTTCCAACCTCCCAGGGA
3' ss Score
6.6
Exon sequences
Seq C1 exon
GCTCGGTCAGGCCCATCTGCCTGCCTTTCTCTGATGAAGAGCTCATCCCAACCATGCCAGTCTGGGTCATTGGATGGGGCTTTACAGAGGAAAACGGAG
Seq A exon
GTGAGTCTTGGGCTCAGAACCTCAGACTCCTTGCCCGAGGGTCTTATTACCCTCCCCAGTGGTAATAAGAAATAAGAACGTCCTTTAGAAAAGTCCACCCCGGCTCACCAGGCACCAACACCCCAAGCAGCAAAAAGTATTGATGGCCTGGAAAATTAACCTGGGCTGAGGGAGGAGGAGAATGAGGAAGTATGTTTCCAACCTCCCAG
Seq C2 exon
GGAAGATGTCTGACACGCTGCTGCAGGCGTCAGTCCAGGTCATCGACAGCGCACGGTGCAATGCGGAGGATGCCTACCAGGGGGAGGTGACTGCTGGCATGCTGTGTGCAGGTACCCCACAGGGTGGCAAGGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650:ENSRNOT00000040313:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGGTCAGGCCCATCT
R:
AGGTGTCCTTGCCACCCTG
Band lengths:
237-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]