MmuINT0162738 @ mm9
Intron Retention
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:44983542-44984635:-
Coord C1 exon
chr9:44984469-44984635
Coord A exon
chr9:44983641-44984468
Coord C2 exon
chr9:44983542-44983640
Length
828 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTCCCCTCTGCTCCTGGTAGGCT
3' ss Score
7.69
Exon sequences
Seq C1 exon
GAAGTATCTTGATGTGTCAAGCTGGAAGGTCAGGGCAGGCTCAAACATACTGGGTAACTCTCCATCCTTGCCTGTGGCCAAGATCTTCATCGCTGAACCCAATCCTCTGTACCCCAAAGAGAAGGACATTGCCCTTGTTAAGCTGCAGATGCCACTCACATTCTCAG
Seq A exon
GTAGGAGGTGGTCCCTGGTAACAGGGCCCCCCAGGTTAACCTTACTCAGGTTCTGCTAAGCAGCTTTGGATACATCATGTTCCCACTCAAGATCTCAGCTTGCCTGTGGGTATCCAACTAGTATGTTCACTCAATATCATTGGTGCCACAAGACCGGCCCTAGCTGTCAAGCTGACATGCACATCTTCTTGGGCAGAGATTCTTCCAAGTCTGTTTGCTCTATCTGGAAGATCAAGGTCATCTGCTCTTGGCTTGTCAGGACCCTCTTTAAAGAATTGTCTGACCCATTGCTCACCCCTGACCAGTGCCCAAGGCCCTGCACAATAACTCCGCCAGAGTGTCAGTGTGCTGCTGCTTGTTTTCCTCCAGGAACAAGGAACCTAGCATTTTCTGGTTTTTCCTTTGTGTGTGCATGTGCGTGTGTCAGGAGACAGGGGGGGGGGGGCGAGGAAGGAGGTGAACAGCTCAAGTGATGTTTGTGGTTCCCAGGGACCACTGTGGGGAGGTTGGGTGGGCAAGATTGAGCATGCTTGAGAATAACTGTCTAGCCTGCAGAGGTTGACCTCTGACTGCTCAGTACCTAGATTTGAGTGATTTGGGGCAGAGAATACTGGCTTGGAGCGTGAAGGTATGTGAGGTCAAAATGGGGGCTCTAGATTAATTTGTTTACACGCCGAGGGCCTCACTGGTAAGTGGTTTATTCTCTCTAGGAACTAGCTAGCCTAGTCTCACTTAGACCAGCAAAATCCCCAACATGAGAAGGCACCAGATGTAGAAAACAATAAGCCATCCCTAATCTAGAATCTTCTTCCCCTCTGCTCCTGGTAG
Seq C2 exon
GCTCAGTCAGGCCCATCTGCCTGCCCTTCTCTGATGAGGTGCTTGTCCCAGCCACACCAGTCTGGGTCATTGGATGGGGCTTTACAGAAGAAAACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091-Tmprss4:NM_145403:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(24.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(24.2=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTCAAGCTGGAAGGTCA
R:
TCCGTTTTCTTCTGTAAAGCCCC
Band lengths:
254-1082
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: