RnoINT0153407 @ rn6
Intron Retention
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49472781-49473835:-
Coord C1 exon
chr8:49473669-49473835
Coord A exon
chr8:49472880-49473668
Coord C2 exon
chr8:49472781-49472879
Length
789 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTCCCCTCTGCTCCTGGTAGGCT
3' ss Score
7.69
Exon sequences
Seq C1 exon
GAAATATCTTGACGTGTCCAGCTGGAAGGTGAGGGCCGGCTCAAACAAGCTGGGTAACTCTCCGTCCTTGCCTGTGGCCAAGATCTTCATTGCTGAACCCAATCCCCTGCAACCCAAAGAGAAGGACATTGCCCTCGTTAAGCTGAAGATGCCGCTCACATTCTCAG
Seq A exon
GTAGGAGGTGGTCCCCGGCCACAGAGCCCCTAGGTGAACCTTTCTCAGGTTCTGCTAAGCAGCTTGAGACACATCCTGTTCCCACTCAAGATCTCAGCTTACCCGTGGGTGTTCAGCTCATATGTCATCTCCATATCACTGGTGCCATGAGACCTGCTCTAGCCGTCAAGCTGACGTGCACGTCTTCCCTGGCAGAGATTCTTCTAAGTCTGTATGCTCTATTTGGAAGATCAAAGTCATCTGCTCTTGGTGTTGTCAGGGCCCTTTTTAAAAAATTGTCACCCCTAGCCAGTGCCCAAGGCCCTGCACAATAACCCTGCTAGAATGTCCGTGTGCTTCTGCTTGTTTTCCTCCGGGAATAAGGAACCTAGCATTTCCTGGGTTTTTTTTTTCTTTGCATGTGCATGTGCATGTGTCAGAAGACAGGGCTCGGGAGGAGGTGAACAGCTCAAGTGGTGTTTGTGGTTCCAAGGGACCACAGTGGGGAGGTTGGGTGGACAAGTTTGAGCATGCTTGAGAATAATTGCCTAGCCTGCAGAGGTTGACCTCTGACTGTTCATTACCTAGACTTAGGGGATTTGGGGCAGACAATACTGGCTAGGCGCATGAGAGGGAGGTGAAGGTATTGTGAGGTCCAGGGTGGAGGGCCTCACTGGCGAGTGGTTCATTCTCTCGAGGAATTACCTAACCTAGTCTCACTTAGACCAGCAAGATCCCCAACACGAAAAAGCACCAGAAAACAATAAGCCATCCCTAATCTAGGATCATCTTCCCCTCTGCTCCTGGTAG
Seq C2 exon
GCTCGGTCAGGCCCATCTGCCTGCCTTTCTCTGATGAAGAGCTCATCCCAACCATGCCAGTCTGGGTCATTGGATGGGGCTTTACAGAGGAAAACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650:ENSRNOT00000040313:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(24.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCTTGACGTGTCCAGCTGG
R:
TCCGTTTTCCTCTGTAAAGCCC
Band lengths:
262-1051
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]