MmuINT0162750 @ mm9
Intron Retention
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:48921229-48922697:+
Coord C1 exon
chr9:48921229-48921407
Coord A exon
chr9:48921408-48922598
Coord C2 exon
chr9:48922599-48922697
Length
1191 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACTATGTGTTTCTCCACAGACA
3' ss Score
11.16
Exon sequences
Seq C1 exon
TTTCAGGCTGTCCCGCCTATCCAGCTGGCGGGTTCATGCAGGGCTGGTCAGCCACGGTGCTGTCCGACAACACCAGGGAACTATGGTGGAGAAGATCATTCCCCACCCTTTGTACAGTGCCCAGAACCATGACTATGATGTGGCTCTGCTGCAGCTCCGGACACCAATCAACTTCTCAG
Seq A exon
GTGAGGCTCTGGCCTTGGAATGAGCAGGCTGGGTGCAGTGGTGTCTAAGGCACAAAGACTGATGGGAGGAACGGTGAGCCGACTCCCAAGACTTCCTGTAGCACTGCAGATCTTAAGCCCATCATGGGGATGATAGGGTGTGTGTGTTTTCCTGAGAGTGAAATCACACTTACAAGGCCCTTTCCACAGTAGGGCTGCAGGTGGCATTTGCTTTGAGTCCTAAGCAGAACTTTACTTGTGCTTTTGCCACCAGTAGCTGGCTCCACTCATGTTCCCAGGCTGGATCCAAGTCCAGCCACTTTGTGACACATTACAGGAAAAGAGATTTCTTATTTATTTATTTATTCTCTCAAACCGCATAACGACTTCGATGAAGAAATCATATACAGACAAGAACACTGACATTTCGAGAAGGGTAAATAGACCCCTGAGTCCAGGGCCAGGGCTCTTCCTGCCACAGTACTTGCCCAACAAGGGTCTCCCTGAAACCACCTGCCTGCATGCTCTGACATACCTTCTCAAGAAATACATAAGTCGATAGAAACACGCACATGTGCACGCACTCACAGTCCCAAACACACACATTTATGAATTCACAAACACAGATCTGTAATTTGAAAACAAGATAGTCTTAAAATTCTAGGTTGGGAGACTTCTGTAAAAGTTGAGGAGCCAGGGTTGCCTTCTAGTTAGATGGGAGAGTGACAGCATCATGATGGGTGTGGTCCAACACCAACTGGAATCTTTCTCCCCGATGCAGTTACAAGGAAGTGTGTCTATGTTGTGGAATGCCAATGTACGACTTAAAATCATATTTGGTTCCACTCATAAAATATGTCACACACTTCTGGAAGTATAGTCCCAAGAAGGGCCAGTCATTCTGGAGGAGACAACCCATTCTCACAAATGGTCTTGTTAGAAATTTGGTATTCAGCAACAGAAGAATCTCCATTCTCCCTCCAGCCCCCAGGTTGGGGCAGGGCAGCGAATTCACTGCCCACCTCTAGAGGGTGCCATACTGTCACCCCCCTCCCCAAGGTGGTACATTGTTCAACCTCTTTGTCTAGTAAGCTTGGTGGTAGAGGCTAGGTCCCAGGACGGTTGAGAAGCGGAGGAGGAGAGTCTTCACTCAGGCTCTGCAGGAGAGAAGCCTAGCCTGAGCCAGGACCAGAACTATGTGTTTCTCCACAG
Seq C2 exon
ACACCGTGGGCGCTGTGTGCTTGCCGGCCAAGGAGCAGCACTTTCCATGGGGGTCGCAGTGCTGGGTGTCTGGCTGGGGCCACACCGACCCCAGCCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268-Tmprss5:NM_030709:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGGCTGTCCCGCCTATC
R:
TATGGCTGGGGTCGGTGTG
Band lengths:
278-1469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: