BtaINT0150459 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24580270-24582341:-
Coord C1 exon
chr15:24582163-24582341
Coord A exon
chr15:24580369-24582162
Coord C2 exon
chr15:24580270-24580368
Length
1794 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGACCACTGCCTCTCCGCAGACA
3' ss Score
8.97
Exon sequences
Seq C1 exon
TTTCAGGCTGTCCCGCCTGTCCAGCTGGCGGGTCCATGCGGGGCTGGTCAGCCACAGCACGGTCAGGCCACACCAGGGGGCTGTGGTACAGCGGATCATCACCCACCCTCTGTACAGCGCCCAGAACCATGACTATGACGTGGCCCTCCTGCAGCTCCGCACCCCACTGCACTTCTCAG
Seq A exon
GTGAGGCTGCGGTGAGGGGGTGGAGGGTGGGAGCCACGAGGGTTCCTAGAAGCCCCCCATGCTGTGAATCTTACAATGGTCTCTTCACTTGGGGACCGTCATGGACTCTGGGGACCTTGGATTGCACCAATTCTTCCACATGCTCTTTTGGGGACAAAGAGTCTGGCCCTTTTCATAGCTGGGTGGCAGGTGGGATTTGCCTCGAGGCCCCCAGAAGAGCTTCCCAGTGACTCCTTCTCCAGCAGGCTGCTCCACCCAGTTCCCAAGCTGGTGCCAGGTCCCAGCCGGGTTAGGAGGGATAATAGTTAACTATATAGTTACTGGGCTTATCTGGCCCTAGTAGTAAAGAACCCGCCTGCCAATGCAGGAGATGTAAGAGACACAGGTTTGATTCCTGGGTAGGGAATATCCCCTGGAGGAGGGAATGGCTACCCACTCCAGTATTCTTGCCCAGAGAATCCCATGGACAGAGGAGCCTGGTAGGCTACAGTCCATAGGGTTGCAAAGAGTCGGACACGACTGAAGCGACTTAGCACACAGCACGTGTAGTTAATAGGATAACAGTTAATAAGCAGCACCATGTTATGGTTAATAAGACTTACTTTACCAAATATCCTTTCACCCAATCCCCCATCCTTGTAACAACCCTTTGACCTCCCCATCCTCATAACAAGCCTGTCAGGGAGCTGAGGCAGGTGTGTACAGATGAGGGAAGTGACTCTCTTCCAGTTCAGGAGGCAAACAGTTCCCGGGCAGGGCGTCTCCTCCACAGTGTCTGCCCTCGAAGGCCAGCTCTCTCTTCCGCATGCATGTGCCAGGCATGCACACACACCTGTGCATGCCCTCACACACTCGTGCAAGGCTCACATGAGTACACAGGCACACCTACTCCTGTGCACGCTTACTCTCACACCACACACACACACACACACTCATACACACTCAGCACTCCTCCCTTCCATTGGTTCCTGTTGGGGTATCCCCAGCAACATATGTTGCTGTATACTGTTTACAGATTCTACCATATACGAGTGCTCTCTGCACTGCTGTTCATCAGCTAATGCTTCTAAATTGACTTAAATATACTCAAAGGGAAATTTGAGGCTTCCACCAGACTGGAGACCTTATGACTTAGAGGGAATATAACAACCACAAAAATGTACAGACTGGAAGCAAAACAGTGCTCAAGTCCCAGCTTGGCACTGTGCTCTGCAGAACTACTGACTCAGGCTGCTCTCTGTGTGCTTAGAAGGGGAGGATGGAAGTCCAGAGAGGCACAGAGCAGCCCAGACAGTCTCTCTCCTCATTGCAGAGAGGCTGAAAGAGAAACGAAGAGGAAATACTTTCTCCCAGTGAAGTGGTGTTTATCTAAGGGCAGGCCTATACACTCTGTAAAATCAGGTTCGCGCTCACCCATAGAACGGGTCCCATGGTTTTGGAACCATGTCCCAAGAGGATCTAGACACCCTGGGGAAAATCCAAACAGGGTCCTCATTAGGAGAGGCTAGGTACAAGCGTCCAGCATGAGTTTCCCTCATCGGTCCCAGGTGGGGTATCATGTGTACCCCGCCCAGCCTAGGATGCCAGGTACACAGCAGTTTCCACAGGGTCCTCTGCGTGAATGGTGACCCCCAGGTGGTACAGAGCCTGGCCCGCACAACCACGTGGGAAGCTGGAACTAGGACTGTTTGAAGAAAGGGGCGAGGAGGACTGGCTGGCCTTGGTCCTTGCGCCCAGGCTCAGGGGCAGAGAGGGGGAGCCTGAGTGGGGCCCAGGACCACTGCCTCTCCGCAG
Seq C2 exon
ACACCGTGGGCGCCGTGTGCCTGCCGGCTGAAGAGCGGGATTTTCCGAGGGGCTCGGAGTGCTGGGTGTCTGGCTGGGGCCACACTGACCCCGGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650:ENSBTAT00000023479:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGGCTGTCCCGCCT
R:
AGCCAGACACCCAGCACTC
Band lengths:
254-2048
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development