BtaEX0037178 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24579719-24582341:-
Coord C1 exon
chr15:24582163-24582341
Coord A exon
chr15:24580270-24580368
Coord C2 exon
chr15:24579719-24579861
Length
99 bp
Sequences
Splice sites
3' ss Seq
GGACCACTGCCTCTCCGCAGACA
3' ss Score
8.97
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TTTCAGGCTGTCCCGCCTGTCCAGCTGGCGGGTCCATGCGGGGCTGGTCAGCCACAGCACGGTCAGGCCACACCAGGGGGCTGTGGTACAGCGGATCATCACCCACCCTCTGTACAGCGCCCAGAACCATGACTATGACGTGGCCCTCCTGCAGCTCCGCACCCCACTGCACTTCTCAG
Seq A exon
ACACCGTGGGCGCCGTGTGCCTGCCGGCTGAAGAGCGGGATTTTCCGAGGGGCTCGGAGTGCTGGGTGTCTGGCTGGGGCCACACTGACCCCGGCCACA
Seq C2 exon
CCCGCAGCTCCGACGTGCTCCAGGACTCCGTGGTCCCTCTGCTCAGCACCCAGCTCTGCAACAGCTCTTGCGTGTACAGCGGGGCTCTGACGCCCCGCATGCTGTGTGCCGGCTATCTCGACGGGAGGGCGGATGCGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.021
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.0=100)
A:
PF0008921=Trypsin=FE(14.3=100)
C2:
PF0008921=Trypsin=FE(20.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGCGGATCATCACCCAC
R:
GCTGTACACGCAAGAGCTGTT
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development