GgaEX0010435 @ galGal3
Exon Skipping
Gene
ENSGALG00000007340 | F1NC10_CHICK
Description
NA
Coordinates
chr24:5616670-5617912:-
Coord C1 exon
chr24:5617737-5617912
Coord A exon
chr24:5617475-5617573
Coord C2 exon
chr24:5616670-5616812
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACACATCCCCTCACCACCAGACA
3' ss Score
5.41
5' ss Seq
AACGTAAGC
5' ss Score
7.35
Exon sequences
Seq C1 exon
CTACCGGTGGCGGAGAGCACTGGGCTGGACGGTTCGTGCTGGCGTCACTCGTGGCTCGGCCGAGCAGGAGGTCGGGGTGCCGGTGGAGAGAGTTATTTCTCACCCGCTGTACAATGATAACAGCATGGATTATGACATTGCTCTGATGAAGCTGCGGGTTCCCTTGAATTTCTCAG
Seq A exon
ACACCATTGGAGCGCTGTGCCTGCTGCCCTCCCACCAGGACCTGCTCCCGGGCACGCCGTGCTGGGTGTCGGGCTGGGGCTACACCGGGCCTGACCAAC
Seq C2 exon
CACAGCTCACCGAGACGCTGAAGGAAGCCCTCGTGCCGTTGATCAGCACCCAGAGGTGCAACAGCTCGTGCATGTACGCGGGAGAGCTCACGGGCAGGATGCTGTGCGCCGGGTACCCGCAGGGGAAGATCGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007340-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(31.9=100)
A:
PF0008921=Trypsin=FE(17.8=100)
C2:
PF0008921=Trypsin=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCGGTGGAGAGAGTTAT
R:
TACATGCACGAGCTGTTGCAC
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event