DreEX6075827 @ danRer10
Exon Skipping
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18228785-18231652:-
Coord C1 exon
chr15:18231468-18231652
Coord A exon
chr15:18230770-18230868
Coord C2 exon
chr15:18228785-18228927
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTTCTATATGTTTAGACA
3' ss Score
6.46
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
TTACAGGCTACCTCAGGTGCCCAGCTGGGTGGTTTATGCAGGTATCATAACCAGCAATTTAGCTAAACTTGCTCAATACCAAGGCTTTGCTGTGGAGAGAATCATCTACAACAAGAATTACAACCACCGGACACACGACAATGATATCGCTTTGGTGAAATTAAAAACTCCACTGAATTTTTCAG
Seq A exon
ACACTATCAGACCTGTATGTCTACCGCAGTATGACCATGATCTACCAGGAGGAACCCAGTGCTGGATCTCTGGTTGGGGATATACACAACCGGATGATG
Seq C2 exon
TTCTTATACCAGAAGTTCTCAAAGAGGCACCCGTACCTTTAATAAGCACAAAGAAATGCAATAGCTCTTGCATGTACAATGGAGAGATCACCTCTCGAATGCTCTGCGCAGGATACTCTGAAGGAAAAGTAGACGCATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717-'9-15,'9-14,10-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.6=100)
A:
PF0008921=Trypsin=FE(14.2=100)
C2:
PF0008921=Trypsin=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGACACACGACAATGAT
R:
GCAGAGCATTCGAGAGGTGAT
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]