MmuEX6065713 @ mm10
Exon Skipping
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:49113124-49115175:+
Coord C1 exon
chr9:49113124-49113302
Coord A exon
chr9:49114494-49114592
Coord C2 exon
chr9:49115033-49115175
Length
99 bp
Sequences
Splice sites
3' ss Seq
AACTATGTGTTTCTCCACAGACA
3' ss Score
11.16
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TTTCAGGCTGTCCCGCCTATCCAGCTGGCGGGTTCATGCAGGGCTGGTCAGCCACGGTGCTGTCCGACAACACCAGGGAACTATGGTGGAGAAGATCATTCCCCACCCTTTGTACAGTGCCCAGAACCATGACTATGATGTGGCTCTGCTGCAGCTCCGGACACCAATCAACTTCTCAG
Seq A exon
ACACCGTGGGCGCTGTGTGCTTGCCGGCCAAGGAGCAGCACTTTCCATGGGGGTCGCAGTGCTGGGTGTCTGGCTGGGGCCACACCGACCCCAGCCATA
Seq C2 exon
CTCATAGCTCAGATACACTGCAGGACACAATGGTACCCCTGCTCAGCACCTACCTCTGCAACAGCTCATGCATGTACAGTGGGGCACTTACACACCGCATGTTGTGTGCTGGCTACCTGGATGGAAGGGCAGACGCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268-'11-23,'11-21,13-23=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.083
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.0=100)
A:
PF0008921=Trypsin=FE(14.3=100)
C2:
PF0008921=Trypsin=FE(20.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGACAACACCAGGGAACTA
R:
CTGTTGCAGAGGTAGGTGCTG
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types