RnoEX6035657 @ rn6
Exon Skipping
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53424758-53426549:+
Coord C1 exon
chr8:53424758-53424936
Coord A exon
chr8:53425860-53425958
Coord C2 exon
chr8:53426407-53426549
Length
99 bp
Sequences
Splice sites
3' ss Seq
AACTATGTGCTTCTCCACAGACA
3' ss Score
10.02
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TTTCAGGCTGTCCCGTCTATCCAGCTGGCGGGTTCATGCAGGGCTGGTCAGCCACAGTGCTGTCCGACAACACCAGGGAACTATGGTGGAGAAGATCATTCCCCACCCTTTGTACAGCGCCCAGAACCATGACTATGATGTGGCTCTGCTGCAGCTCCGGACACCAATCAACTTCTCAG
Seq A exon
ACACTGTGAGCGCTGTGTGTTTGCCGGCCAAGGAGCAGCACTTTCCACAAGGGTCGCAGTGCTGGGTGTCTGGCTGGGGCCACACCGACCCCAGCCATA
Seq C2 exon
CTCATAGCTCAGATACACTGCAGGACACAATGGTACCCCTGCTTAGCACCGATCTCTGCAACAGCTCATGCATGTACAGTGGGGCACTCACACACCGCATGCTGTGTGCCGGCTACCTGGATGGAAGGGCAGATGCGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058-'11-18,'11-16,12-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.167
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.0=100)
A:
PF0008921=Trypsin=FE(14.3=100)
C2:
PF0008921=Trypsin=FE(20.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGACAACACCAGGGAACTA
R:
GCAGAGATCGGTGCTAAGCAG
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]