GgaEX0010435 @ galGal4
Exon Skipping
Gene
ENSGALG00000007340 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr24:5494356-5495598:-
Coord C1 exon
chr24:5495423-5495598
Coord A exon
chr24:5495161-5495259
Coord C2 exon
chr24:5494356-5494498
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACACATCCCCTCACCACCAGACA
3' ss Score
5.41
5' ss Seq
AACGTAAGC
5' ss Score
7.35
Exon sequences
Seq C1 exon
CTACCGGTGGCGGAGAGCACTGGGCTGGACGGTTCGTGCTGGCGTCACTCGTGGCTCGGCCGAGCAGGAGGTCGGGGTGCCGGTGGAGAGAGTTATTTCTCACCCGCTGTACAATGATAACAGCATGGATTATGACATTGCTCTGATGAAGCTGCGGGTTCCCTTGAATTTCTCAG
Seq A exon
ACACCATTGGAGCGCTGTGCCTGCTGCCCTCCCACCAGGACCTGCTCCCGGGCACGCCGTGCTGGGTGTCGGGCTGGGGCTACACCGGGCCTGACCAAC
Seq C2 exon
CACAGCTCACCGAGACGCTGAAGGAAGCCCTCGTGCCGTTGATCAGCACCCAGAGGTGCAACAGCTCGTGCATGTACGCGGGAGAGCTCACGGGCAGGATGCTGTGCGCCGGGTACCCGCAGGGGAAGATCGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007340_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.7=100)
A:
PF0008921=Trypsin=FE(14.3=100)
C2:
PF0008921=Trypsin=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCGGTGGAGAGAGTTAT
R:
TACATGCACGAGCTGTTGCAC
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]