RnoINT0153419 @ rn6
Intron Retention
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53424758-53425958:+
Coord C1 exon
chr8:53424758-53424936
Coord A exon
chr8:53424937-53425859
Coord C2 exon
chr8:53425860-53425958
Length
923 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACTATGTGCTTCTCCACAGACA
3' ss Score
10.02
Exon sequences
Seq C1 exon
TTTCAGGCTGTCCCGTCTATCCAGCTGGCGGGTTCATGCAGGGCTGGTCAGCCACAGTGCTGTCCGACAACACCAGGGAACTATGGTGGAGAAGATCATTCCCCACCCTTTGTACAGCGCCCAGAACCATGACTATGATGTGGCTCTGCTGCAGCTCCGGACACCAATCAACTTCTCAG
Seq A exon
GTGAGGCTCCGGCCTTGGAATGAGCAGACTGGGTGCAGTGGTGTCTAAGGAACAGACACTGATGGGAGGAGGGGCGAGCTGATCCCTCAGGCTTCCTGTAGCACTGCAGATGGTAAGCCCATCAGCTCACGGGGATGATAGGTCGTGCACATGCGTCTGAGATCAAACTGAAGTAACACTTACAAGGCTCTTTGGAGGACAACCATTCAGACTCCTTTACTCACAGTCCCAAACACATGTATTCACGAATTAACACAGATCTGTAATTTGAAAACAAGAGAGTTTTAGAATTCTAGATTGGGGGTCTTCCGTAGATGTCATGGAGCCAGGGCCTCCTTCTAGTTAGCAGGGAGATTGACAGCATCACAAGGGGTGCGGTCCAGCACCAACTGGAATTTTTCTCCTTGTTGCAGTTACACGGAAGCATGTTTATGTTGTGGAATGTCAATGTACAACTTAAAATTGTATTTCGTTCCACTCATAGAACATGTCACACACTTCTGAAACCATCATCCCAAGAAGGATCGGTCACTCTGCAGGAGAAGAACCATTCTGGACAAATGGGTCTTGTTAGAAATTTGATATTCAGAGACAGAAGAATTTCCATTCTTCCTCCAGCCCTCAGGATGGGGCAAGGCAACGAATCCACTGTCCACCTCCTCTAGGGGGTGCCATACCTTCACACACACACACACACACACACACACACACACACACACACACACACACGGCTGCATGCACACTTGCACGCACACACGCGCGCTCCCAGATGGGACATTGTCCAACCTATCTCTCTGTCTAGCAAGCTTGGTGGTGGAGGCCAGGTCCCAGGACTGTGAAGTGGGTGAGGAGGCTCTTCACTCAGGCTCTGCAGGAGAGAAGCCTAGCCTGAGCCAGGACCACAACTATGTGCTTCTCCACAG
Seq C2 exon
ACACTGTGAGCGCTGTGTGTTTGCCGGCCAAGGAGCAGCACTTTCCACAAGGGTCGCAGTGCTGGGTGTCTGGCTGGGGCCACACCGACCCCAGCCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058:ENSRNOT00000011107:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(26.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGGCTGTCCCGTCTATC
R:
TATGGCTGGGGTCGGTGTG
Band lengths:
278-1201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]