MmuINT0164414 @ mm9
Intron Retention
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:23479983-23481890:+
Coord C1 exon
chr8:23479983-23480053
Coord A exon
chr8:23480054-23481610
Coord C2 exon
chr8:23481611-23481890
Length
1557 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCTTTCTCCCCTATTTTTAGGCT
3' ss Score
9.74
Exon sequences
Seq C1 exon
AATCTTCCTAAATACTATGATGACTGCCCCTTTTTCTTTTGGTTTCATACATCTTTTATTAAAAATAACAG
Seq A exon
GTAAGATACATTGTAATCCAACAGAAACAGCTTAATGTGCCACATATTAGGGCAAGGTTTATGCCAGCTGTCCTCTGAGTTCAACTCATAGAAACAAGATCCGTGAATCATCACCCCAATGCCTTATGTCGTCTTAGTATGGGTTTAAAGTCTTCTGGATTTGTTTGCATTTATTATTAATATGAAACATACATACAACACAGCATACATTTATACATTTACCGTTTGTGTCTCCTTTTGTCTTCCCCCCCAACACCCCCCACCCCCGCAACCCCATGGAACTCAGTCCCAGTAGAGGCTCCGGCCACCACTCATCTCACCTCACTTGGGAAACTATGTAACTTGGTAAAGGTTTTATTTTAAACACAAGCTATTTGTTGAGCCTCAGTGTTGTGCTGATCACAAGCTCTGAGCCCTTGGACTCAGATCTGAGTGTGACAGCAAATTCCTTCCAGGGAAATTTAATATGCATCTGCTCAATGCCTTGAGTTTGACAAGGCCTCAATGAACAAGTGTTGGCTAACTGGCACCCACCCACCAAATCCCATGTGTGACCCAGAGGTGTCCACAGCTAAGAAGCTGATTGACACACCTAACATCTGGGACAGGAGTTAGAAAGCATAGGTATTAGTGAAGTCACCTAAAATCATTCCTGTGATAATTTTCCTCTTAAATGTGATTCGAAAATCATTTATTATAAATTGAACTGGAAATCTTTATTAAAAATAATTGGATTTGAATATTATCCCAAAGAATCTTCTGGTGGTAATAAGAAGGGGGAGGAAGAGTCAGACATATTGATAGGCAGGCAGACAGACAATGAGAACCCACTATGTCCTAACCTTCTCTTCAAGCTGACCGAGACTGGGTAACAAGTCAAGCCTTGTAAGACACCAGCAGGGAGCCAGTGGCCCAGACACGCACACACATTTAGATGAGTAAGAGCGACCCTGAATCTGGGGGAGATTTTTACCATTTATTTCTGGATGTGAAAACCCTTTGACTCGTGAGTCTTCAAAAGCCAGCTGGTAATTTGTTGCTATTTCTCAAGAGTGATTTTTGCTAGAGGACAGTTTCGTTCTTTATGGTCAATGTTAATATAAAAGAAGCAAAGTTGGATCATTTTCAGTGCTCACTTTTATAGGAGATTCTAAACGTGTCTGTAACATTTAATTTGCATATGAGTATGATGTTTTTATAGTCATAGTCAGGAGGTGGCTGTTTAGCCCAAACACCAACTTTTCCACTTAGAGGAGAAGCAGTATTTTATTACTGAGTTTTATTATACATCTCTGGAGTATCTTTCACTTATAGAAATATCATCAATAAGGTAATAAAAACCAATGTTGGAAGAATCAGCAACATATCCATACAAGGATTTTGTATCTCGAAGAATTGTAAGCAGCCAACCAACACACAGAGGCTCTGAGGGACTGAGAGGGACGGAGGCTCTGATCAGCAGTGAGGTCTTTTCTGATATGCCAAAATGGGTAAACTACTGCATGCCTTTCTGTTAGCCCTAAAAGAAAGGGTAATGGCTTTCTCCCCTATTTTTAG
Seq C2 exon
GCTTTATCTACCAAGAAACGAATTGGATAATACCCATAAACCAAAAACATGGAAAATTTATGGTGAAAAGTTTGCAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTTCTTGGATAGAATCATGTTCTTCCAGATCCATGCTACATAGTTATGTCTTCTAACCAATGTTTTTGATGGTATGTCTGTATTTTATATATATGTGTGTGTATATGTATGTACATATGTTTCTGGGAAGTATATTAAATGTATACAGGAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-Tpte:NM_199257:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(17.0=100)
A:
NA
C2:
PF104094=PTEN_C2=PD(23.7=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAAATACTATGATGACTGCCCCT
R:
ACTTCCCAGAAACATATGTACATACA
Band lengths:
322-1879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: