BtaINT0002518 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MYA3]
Coordinates
chr12:21794203-21796575:+
Coord C1 exon
chr12:21794203-21794273
Coord A exon
chr12:21794274-21796472
Coord C2 exon
chr12:21796473-21796575
Length
2199 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AAATTTTTTTTCTATTCTAGGCT
3' ss Score
10.1
Exon sequences
Seq C1 exon
GCTCTTCCTAAATACTACGAAAACTGTGCATTCTTCTTCTGGTTCCATATGTCTTTTATACGAAATAACAG
Seq A exon
GTATGGCTGTGGCATAATCCAGTAGAAACAGCTTAGTCTCCAATGACTACGTAAGGGGTAATGACAAGCCTTTATTTTAAAGTTATTTTACTTGGCTGTGTTGGGTCTTAATTGTGGCACACAGGCTTAGTTGCCAACCTGTGGGACTGCTCCATGGCATGTGGGATCTTAGTTCCCTGACCAGAGATCGAACCTGCATTTTAAGGCAGGTTCTTAACCACTGGGCCACCAGGGAAGTCCCTGACAAGTCTTTTGCTAATTACCCAAACCCAATTTATAGATACCAACCAAAAATTCTTTTGAGTCCCTGTTTTCACTGCCTTATTTATTGTGATCTAGTTGTTTTAAAAATATGGCTATTCTTGAGATCCATTGTTGCATTATTCTCAAGACCCATGCCGTAGGACTGTCATAAAACATCCTGTAACCAGATCTTGACTGGTAACAAGTCCTTCCCGTGAAAGTTCAATATGAGTCTGTTTAGCACCTCAAATATGGCAGGTCCCCAGTACGTGCTGATTTACTGATGACCAACCGATACCATATTCTACACCACAGTAAGGCATCACCCAGGGAGCCTTCGGCTAGTTTAAAAGCTGGCTGACACACTTCTATTTTACACTTCTATATTTAGGGCAGAAGTTATAATCCACAGTAAGTACTGATGAAGACAGCTTAAAAAAATTATGAATAGTCTCCCATAAAAAATGTTCTAATAACTATAAATTGGATAATCTATTGATTTGAAGATTATGCCAAAGAACCTCTATCATATCTGAACCTCATTCCTACATCTAGAAGTCCCCCACTTCTCTTGTCCTGTGGTGCTGAAAGTTTGAGATTGATATCACCATCCCATCCCATCCAGGGAAAAACAATATACAAAAAATCGTACAGGAGTTTTGAAGAAGTGGTTGTGATTATATATGGCCTGAGTTGATAGTTCTCCTGACATACAATTCTAGCTTTTTCTTCAAATGTGGATGCCCTCTCGTCCCACCTCAAGTTCCAGGAAGGCAACAATATACCTACAACGCACACACACACTTGGTGGATTTCGATAGAATGAACTTTAGATGTGATGGAACTTTACCAGATTTTTTCCCCTTGGATGTGCTTGTGATCAGTTGTGTCTAACTTTTTGCAACCCCATGGACTGTGTAACCCACCAGGCTCCTCTGTCCATGGAATTCTCTAGGCACGAATACTGGAGTGGGTTGCCATTCCCTTCTCCAGGGAATCTTCCCAACCCAGGGATCGAAGTGCCTTTTAAATTATGAAGTGGGTATTTTGGATGAATTAAGTCTCAAATACAAACAGCTTCACCCAGTAGTAAGGAAATCTAAATGTTAAATTTCCTGGCTGGCCAAGTCTCCTGCACTGGCCAGCAGATTCTTTACTACTGAGCCACCAGGGAAGCCCCCCTGGATGTTTACAGATGGAAAACTTTGACTCATAACATGAGCAAAATCCCTCAGAATTGACATCTAGGTGGAACTTCATTTGGTGCTACTTCTGCAAAGCGGTTCTTGCTGAGGGAGTTTTTTCCTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACGCCCACTTCATAATTTAAAAAGACACTTGTTTATCCTGGGTTTTAATACACATCCAGTCTGATTTGTCACACAGCAATTTATTAAATATGGATGTTAATTCCAAAGGCAATATTAAAAGAATCAGTGGCATGTTGTTACTCAAGGTTATGATATTTTTCTCTCTTAATAGAGAGTTGAGCTTAGAAAGCTAACTAGATGCAGAGGAACTGAGACTGATGGTAGCCAGCGAGGCTTTAAAACAAGGGTGCCCCTCAGCATGGCTTTTCTGTTAGCCCTAAAATAAAATGTAAAAAAAAATTTTTTTTCTATTCTAG
Seq C2 exon
GCTTTATCTTTCAAGAAGTGAATTGGATAATCCCCATAAAATAAAAGCATGGAAAGCTTACAGTCCACAGTTTGCAGTCGAGGTATATTTTGATGACATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011654:ENSBTAT00000035777:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(16.9=100)
A:
NA
C2:
PF104094=PTEN_C2=PD(23.5=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development