MmuINT1033648 @ mm10
Intron Retention
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22369511-22371418:+
Coord C1 exon
chr8:22369511-22369581
Coord A exon
chr8:22369582-22371138
Coord C2 exon
chr8:22371139-22371418
Length
1557 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCTTTCTCCCCTATTTTTAGGCT
3' ss Score
9.74
Exon sequences
Seq C1 exon
AATCTTCCTAAATACTATGATGACTGCCCCTTTTTCTTTTGGTTTCATACATCTTTTATTAAAAATAACAG
Seq A exon
GTAAGATACATTGTAATCCAACAGAAACAGCTTAATGTGCCACATATTAGGGCAAGGTTTATGCCAGCTGTCCTCTGAGTTCAACTCATAGAAACAAGATCCGTGAATCATCACCCCAATGCCTTATGTCGTCTTAGTATGGGTTTAAAGTCTTCTGGATTTGTTTGCATTTATTATTAATATGAAACATACATACAACACAGCATACATTTATACATTTACCGTTTGTGTCTCCTTTTGTCTTCCCCCCCAACACCCCCCACCCCCGCAACCCCATGGAACTCAGTCCCAGTAGAGGCTCCGGCCACCACTCATCTCACCTCACTTGGGAAACTATGTAACTTGGTAAAGGTTTTATTTTAAACACAAGCTATTTGTTGAGCCTCAGTGTTGTGCTGATCACAAGCTCTGAGCCCTTGGACTCAGATCTGAGTGTGACAGCAAATTCCTTCCAGGGAAATTTAATATGCATCTGCTCAATGCCTTGAGTTTGACAAGGCCTCAATGAACAAGTGTTGGCTAACTGGCACCCACCCACCAAATCCCATGTGTGACCCAGAGGTGTCCACAGCTAAGAAGCTGATTGACACACCTAACATCTGGGACAGGAGTTAGAAAGCATAGGTATTAGTGAAGTCACCTAAAATCATTCCTGTGATAATTTTCCTCTTAAATGTGATTCGAAAATCATTTATTATAAATTGAACTGGAAATCTTTATTAAAAATAATTGGATTTGAATATTATCCCAAAGAATCTTCTGGTGGTAATAAGAAGGGGGAGGAAGAGTCAGACATATTGATAGGCAGGCAGACAGACAATGAGAACCCACTATGTCCTAACCTTCTCTTCAAGCTGACCGAGACTGGGTAACAAGTCAAGCCTTGTAAGACACCAGCAGGGAGCCAGTGGCCCAGACACGCACACACATTTAGATGAGTAAGAGCGACCCTGAATCTGGGGGAGATTTTTACCATTTATTTCTGGATGTGAAAACCCTTTGACTCGTGAGTCTTCAAAAGCCAGCTGGTAATTTGTTGCTATTTCTCAAGAGTGATTTTTGCTAGAGGACAGTTTCGTTCTTTATGGTCAATGTTAATATAAAAGAAGCAAAGTTGGATCATTTTCAGTGCTCACTTTTATAGGAGATTCTAAACGTGTCTGTAACATTTAATTTGCATATGAGTATGATGTTTTTATAGTCATAGTCAGGAGGTGGCTGTTTAGCCCAAACACCAACTTTTCCACTTAGAGGAGAAGCAGTATTTTATTACTGAGTTTTATTATACATCTCTGGAGTATCTTTCACTTATAGAAATATCATCAATAAGGTAATAAAAACCAATGTTGGAAGAATCAGCAACATATCCATACAAGGATTTTGTATCTCGAAGAATTGTAAGCAGCCAACCAACACACAGAGGCTCTGAGGGACTGAGAGGGACGGAGGCTCTGATCAGCAGTGAGGTCTTTTCTGATATGCCAAAATGGGTAAACTACTGCATGCCTTTCTGTTAGCCCTAAAAGAAAGGGTAATGGCTTTCTCCCCTATTTTTAG
Seq C2 exon
GCTTTATCTACCAAGAAACGAATTGGATAATACCCATAAACCAAAAACATGGAAAATTTATGGTGAAAAGTTTGCAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTTCTTGGATAGAATCATGTTCTTCCAGATCCATGCTACATAGTTATGTCTTCTAACCAATGTTTTTGATGGTATGTCTGTATTTTATATATATGTGTGTGTATATGTATGTACATATGTTTCTGGGAAGTATATTAAATGTATACAGGAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481:ENSMUST00000211497:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(17.0=100)
A:
NA
C2:
PF104094=PTEN_C2=PD(23.7=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAAATACTATGATGACTGCCCCT
R:
ACTTCCCAGAAACATATGTACATACA
Band lengths:
322-1879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types