RnoINT0155121 @ rn6
Intron Retention
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74558529-74560219:-
Coord C1 exon
chr16:74560149-74560219
Coord A exon
chr16:74558824-74560148
Coord C2 exon
chr16:74558529-74558823
Length
1325 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GGGTTTTCTCCTGTCTTTAGGCT
3' ss Score
9.66
Exon sequences
Seq C1 exon
AATCTTCCTAAATACTATGATGACTGCCCCTTTTTCTTTTGGTTTCATACATCTTTTATTCGAAATAACAG
Seq A exon
GTAGGATACTTTGTAATCCGACAGAAACAGCTTAATGTGTCATGCGTTAAGACAGGGATTATGCCAGGTTCAACTTCCCCCCCTCCCCCATGGACCTCATTCCCAGTAGCTGCTCTCACCACCACCCAGCCCACCTCACCTGAGACATTTTGTAACCTGTTGAGGGTTATTTTTTAAATACGGCTACTTGTTGAACCTCAGCGCTGTGCTAACCACAAGCTCTGAGCCCTTGGATTACAAGTTAAAGTGTAGTATACTCAGATCTTGACGTGACAGTACATTCCTTCCAAGGAAATTTAATACGCATCTGCTCAATGCCTTGAGTTTGATAAGGCGGGTCTCAAGGAATAAGTGTTGGTTAGCTGTCACCCACCGACCAAATTCCGTGTGTGACCCCGAGGTGTGCGCAGGTCAGAAGCTGATTGGCACGCCTAACATCTAGGACAGGAGTTAGACAGCATAGGCATTGGTGAAGTCACCTAAAGTCATTCCTGTGACAGTTTTCCTCTTAAATGTGATTAGAAAATCATTTATTAGAAACCGAATTGGAAATCCTTATTAAAAAAGAATCTTGTTGTAATGAGAAGGGGGAGGCAGGGACAGACACGTTGACAGACAGACGACAGACAGACAGAATGAGAATCCACTATGTCCTCACCTTCTCTTCAAGCTGCCCAAGACTGGATAACGGGTCAAGGTTTGTAAGACACTAGTGGCCCACAGACTCACACTGCGCACACACTTAGATGCGTAAAGCCACCCTGGATTTGATGGAGATTTTTACCACTTATTGCTGAGTGTGCAAGCCTTTGAGTCATGAGTCTTTGACAGCCAGCTGGTACTCGGGTGCTAGTTCTCAAGAGTGATTTTTGCTAAAGGATGATTTCGTTCTTCATGGTCAATGTTAATATAGAAGCAAAGCTGGATTGTTTTTAATGCTCACTTTTATATGAGATTCTAAATGTTCGCACTGTTTAATTTGCATATGAGCATGATGTTTATATAGTAGAGGTGGCTGTTTAGCCAAAACACCAACTTTTCCACCTAGAGTAGAAGCGGTATTTTATTACTGGGTTTCATTAGACATCTCTGGAGTATTTCTCACTTAGAGAAATATCAATAAAGGAATGCTGGAAGCATCAGCAACATGTCCTTACTAAGGTATTTTGTATCTTGAAGAATTGCAAGGAGCCAGCTGACACACAGAAGAGGGACTGAGGCCCCGATCAGTAGTGGTCTCTTCTGACATGCCAAAATGGGTAATCTATCGCATGCCTTTCTGTCAGCCCTAAAAGAAAGTGTAATGGGTTTTCTCCTGTCTTTAG
Seq C2 exon
GCTTTATCTACCAAGAAGCGAATTGGATAATACCCATAAACAAAAAACATGGAAAATTTATGGTCCAAAGTTTGCAGTCGAGGTGTATTTTGAGGAGATAAGCTCCACGGTTATGTACTAGCTGTTGAATAAGTGCCGCTCCCCTTCTTGGATAGAATTATGTTCCAGATCCGTGCTACATAGTCATGTCTTCTAACCTATGTTTTTGATGGTATGTCCGTATTTTATATATATGTGAGTGTATATGCATGTACATATGTTTCTGGGAAATATATTAAATGTATACAGGAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837:ENSRNOT00000034670:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(17.0=100)
A:
NA
C2:
PF104094=PTEN_C2=PD(23.7=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAAATACTATGATGACTGCCCCT
R:
TCCCAGAAACATATGTACATGCA
Band lengths:
334-1659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]