MmuINT0166411 @ mm9
Intron Retention
Gene
ENSMUSG00000036938 | Try5
Description
trypsin 5 [Source:MGI Symbol;Acc:MGI:102756]
Coordinates
chr6:41261231-41261828:-
Coord C1 exon
chr6:41261692-41261828
Coord A exon
chr6:41261426-41261691
Coord C2 exon
chr6:41261231-41261425
Length
266 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
ACTGTATTTCTCCTTTCCAGGGT
3' ss Score
10.8
Exon sequences
Seq C1 exon
TGAACAACCCAGACCTGCTTCAATGCCTGGATGCCCCATTGCTACCTCAGGCTGACTGTGAGGCCTCTTATCCTGGAAAGATCACCAATAACATGATCTGTGTTGGCTTCCTGGAGGGAGGCAAAGATTCCTGCCAG
Seq A exon
GTATTTGGCTTCTATCCTACAAAAATAATCTGTTCTCCTAGGATTGGGGTTAACATGCCCAAGTGTATGAGGCAGGAAGTTTCCTGTAGTGGCTCCATGGAAAAGTGAGGAGGGCTATTCTGGAGGTTATTTCAACATGTCAGCCAGAACAGAGGATGGGCTAACCAAGAGAGGCAAAGCATGGCTAGAATGGCATCTTCAGGTCAGAGTAATGTGGTCCCTTTTCCTTGTGCCTCTTCCTTCAATACTGTATTTCTCCTTTCCAG
Seq C2 exon
GGTGACTCTGGTGGTCCTGTGGTTTGCAATGGACAGCTCCAGGGCATTGTCTCCTGGGGCTATGGCTGTGCCCTGAAGGACAACCCTGGTGTGTACACCAAGGTCTGCAACTATGTGGACTGGATTCAGGACACCATTGCCGCAAACTAAGCATCCCTTTGAAGTCATTATGCCAATAAAGTGAATTTTCCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036938-Try5:NM_001003405:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=82.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAACCCAGACCTGCTTCA
R:
AAGGGATGCTTAGTTTGCGGC
Band lengths:
295-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: