MmuINT0166946 @ mm10
Intron Retention
Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32764893-32767301:-
Coord C1 exon
chr2:32767178-32767301
Coord A exon
chr2:32764969-32767177
Coord C2 exon
chr2:32764893-32764968
Length
2209 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CAGTCTGATTCTTGCTATAGGTG
3' ss Score
7.35
Exon sequences
Seq C1 exon
GCAGCGGTTATTGGAACGCAGGAAAGCCCAAGTCCTGGTGAAGCTCTGGAAGCAGGAACGTCTTGGGACCCCTGAAGAGGAAGTGACTCTTTACCAGGCTCCGCAGCTGGCAGAGGAAAAAAAG
Seq A exon
GTGAGTGGAAGGCCTGAGGCGCCTGGAGTCTAATGTGAGCCTGCCCTACCCTCATCTGAGATGGAGACCTAGAAGTAAGGGTGGCCCTGTGCTTGTGCATGATCAGACCCTGCTCGGGGTCTGCCTTGCCCTCCTTACTAAACTGGCCCTATGGTCTTTCCATTGTCTAGCATAGAAAAAACACTGGGGGCGGGGGGGGGGGGAGAGCAGATGGCTCGTGCTGTATGTGTGTTGTCTGTGCAGGACGTATGCCCACGTGGAGGCCTCAGGGGGATGTTGGGTGTCCTTCCTTCCCTATCATTTTCTGCCTTATTGAGACTAAGGCGGCCTCAGAAACCTCCTGTCTCCACTTCCTCCTCTCCATGACAGTGCCAGGGCTAAGGTGCATATAGCCATTCCAGGTTATGTGTATGTGCTGGGAATGTCAGCTCAGGCGCTCAAGCTTGCATAGCAGGTGCTTGACCCACACATCTTCCCTGTCTGTTAGTATTGCTTTTCCCAACAGGGTCTTACTACATAGCCCTAGCTTGCCTGGAATTCACTATATAGACAAAGCTGGCTTTAAACTCAACAGAAATCTACCTGCCTCTACATCCCTAGGGCCAGGATAAAAGGTGTGTAACCCCTACACACACACACACACACACACACACACATTTGTTTTCGAGACAGTGTCTTGCTATGTAACTCAGCTGACCTAGAACTTATGTAGCTTAGGCTGGCCTCAAACTGACAGCAGTCCTCTCGCCTTAAAAGTGATGGAACTACAGGCATGAGCCACCACACCCATTTTTAAGTGCACAAGTGAAGGGATAGCTGAATTTTCACAAAAGGAGTGTGCTATGGCCTCAACACCCAAGTCAACAAACACATTCTCAGCTCCCAGAAGGCTGTTTGGGCATGCACCCTCTTAGACCCCTGACCCACCCCCAACTTCTGCACAAGGCTGCCCCGATTCCTAACGCTATATGTGATCTCTGGGTCCTTTCCCTAAGTGTTGTATTTATAAGGGTCACGCAGCTGAAGTGAGAGCTGCCCCGGTGCCCTCCCTAGTTCACATTCATAGGAAAGAACATGCATCTGCGTGGCCTTGACGTCGCTGTGAGCATCCTCTCTCTGCTAGATAAATTGAGGTGGGCCCAACTCCATAGCTGGCCTAGCAGGTACCTGTCAGCTTTACCTTTTCTCCCCAGCCACAGATGTGATCACGGGTGCAGGAGGCCACCAGGCCGGCTGGGCACAAAGCTTCTTCCCTCCTCAGCAGGCTACTTCAGTGCTCAGAGACCTGGTTCTCTGCACTGTGAAACAGGCATAGCAGAAGTAGTCCCCCGGGTGAACTTGCGTTTCCCGGGGCTCAGCGCTTTAGTTTACAGAAGCCTGGCCCCATGTGAACCAATGTTCTACGTCTCTAGGATAGGATGGCTATCTGACCTGGCTAAATGCCCTGCCTGCAGTCTTAGCCTCCTGGCCTTCCCACCCATCCTAACCAAGTCTCTGTGAAGAACTCTTAAACGGGGAGAAAGAATGTTCGATTGGAAAAACACAACAAAACAACATCATCAAAATGGGTTGGGAGAAGCTATGGCTCAGTGGTTAAGTCAATACCGCCTTTGTAGAGGACCTGAGTTTGGTTTCCAGCACCTACACTGAGCTGCTCACAAATGCCTGGAACTCCAGCTCCATCTCTCCGATGCCCTCTTCTGACCTTTGTAGGCACTTGTATTCTGCTGTACACACAAACACTCATGCATAAACATCTTAAAAAGTGGAAAAGAAGCTGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAGAAAACAAAAACAAACAAACAAACAAAAAAGTAGAAAATAAACCCCTTTTTAAAATGACTGCTAGCTGTGTGGAGGTCACATGCCTTTAATCCTGGCACAAGGGAGGCACAGACAGGGAGATCCCTGAGTTCCAGGCCAGCCTAGTCTTAAGAAGTTCCAGGACAGCCTGGGTTACACAGAGAAACACTGTCTTAGAAAAAAAAAAATGGCTAGACTGTTCTGTAACCTTGCAAGCATATGAGTGTGGGTGCAGGAGTCTACCAGTCTGCAGCTCCCCAGTCTGATTCTTGCTATAG
Seq C2 exon
GTGAAAACCGCTCGCAGAAGGACATCCCTGACAGACAGCTATGCGGACCAGACCTCCTCAGGCTCCGTCTTTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021:ENSMUST00000066478:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=NA C2=0.723
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types