RnoINT0157497 @ rn6
Intron Retention
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11801359-11803840:-
Coord C1 exon
chr3:11803714-11803840
Coord A exon
chr3:11801438-11803713
Coord C2 exon
chr3:11801359-11801437
Length
2276 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AAGCCTGATTCTCACTTTAGGTG
3' ss Score
7.25
Exon sequences
Seq C1 exon
GCAACGGTTAATGGAACGCCAGAAAGCCCAAGCCATGGTGAGGTCCTGGAAGAAGGAGCCTCCTGAGATCCCCAAAGAAGAGGAAGTGACTATTTTCCAGGCTCCGGAGGTGGCAAAGGGAAAAAAG
Seq A exon
GTGAGTGGAACGCCTGAGGCTCCTGGAGTCTGATGTGAGCCTAACCTACTCTCCCCCGAGATGGAGACACAGAAGTAAGGGTGCCCCTGTGATTATGCATGACCACCTGTGCCTTGCCTTCCTTACTAAGTTGGCCCTATAGTCTTTCCATCGTCTAGCATAGAGAAAGACACTGGGGGGCGGTGCAGGTGGCTTGTGCTGTATGTGTGTTGTCTGTGTAGGACATGCCCACGAGGAGACCACAGGAGGCTGTTGGGTGTCCTTCCTTCCCTATCATGTTCACTGTATTGAGACTAAGGCAGCCTCAGAAACCTGTCTCCCTCCACTCCACTCCAGTGCTGGGGCTAGAGGCGCACAAAGCCATTCCCAGATTGTATATCCGTGCAGGAATTTCAACAGAGGTGCTCAAGCTTGCATGGCCGGTGCCTGCCTGACTTACATAGCTGTCTTCCTTGTCAGTATTGCTTCTCCAGACAGGGTCTCACTACATAGCCCTAGCTTGCCTCGAATTCACTATATAGACAAAGCTGGCTCCAAACTGGCAGAAATAATCTTGCCTCTGCATCCCTAGGGCTAGGACTAAAGGCATGCAACCTTTGTGCTGACGCCACTACACCCACGTCAACAAACACTCTCAGCTCCCAGAAGGCTGTTGGGCATGCACTCTCTTAGGCCCCTGTCCCACTTCTGTACAAGGTTGCCCCAATTCCTAACTCTCTATGTGAAACTTACCTTCCTTTTAAACGAAGACCTACGGCCTGCTCCCCATCTCTGGGTCCTTTCCCTAAGTGTTACATTTATAAGGGTCCCACAGCTGTAGTGGAGGCTGTACTGGGGCCCTCCTAGTTCACACTAACATTCACCTACCCGACGTCACTGTGAGCATCCTCTCTCTGGGACACAAGCTGAGATGGGCACAGCACAAGGCCAACGGGATGGCTGGAGGAGCTTTACCTTTTCTCCCCAGCTACAGATGTGACCCAGGTGGAGCAGCCACCAGTCCCACTGCAGACAAAGCTTGTTCTCTCCTCAGCAGGCCACTTCAGTGCGCAGTCTCCTCCGTTCTCTGCACTGTGAAACAGGCAGAGCAGAAGTAGTCCGCGGGTGAATGAAAGAGTGTGCATGAGGAAGAGACTGCTCAGTTCCTAGCTAGCATTTCCCAGGGCTCCGCACTTTAGTTTACAGAAGCCTGGCCCCATGTGAACCAATGTGCACCCCGCACTACCTTTCTAGGGTATGATGCCTGTCTGGCTTGCAGTCTTAGCCTCTTGGCCTTCCCACCCTTCCTGACCAAGTCTCTGTAAAGAACTCTTAAGTATGAGAGAAAGAATGCCCGATTGGAAAGCACAACAAAACAACAAAATGGTTGTGAGGAGCTGTGGTTGAGTAGTTAAGTCAGTGTCGCTTTTGTAGAGGACCTGAGTTTGGTTTCTAGCACCTACACTGAGCTGCTGACAAATGCCTGTAACCCCAGCTCCATCTATCTGATGCCCTCTTCTGACCTTTGTGGGCACGTGTACACACAAACACGCGTACACATTTTAAAAAGTAGAGAATAAACAAATCTTTTTAAAAAACAACTGATAGCTGTGTAGTGGAAACACACACACACACACACACACACACACACACCACACACACATACACACCCCACACACACACACCACACACACATACACACCACACAAACACACCACACACACATACACACCACACAAACACACCACACACACCACACACACACCACACACACACACCACACACACACACACCACACACACACATACACACCACACACACACACCACACACACATACACACACCACACACACACACCACACAGACCACACACACAGACACACACATATACCACACACACCCACATACCACACACACACCACACAGACACACACACCACACACACAGACACAAACACACACCACACACACCACACACACACAGACACACACATCACACACACATCACACACACATACACCACACACACACATACACAACACACACATACACACATAACACACACACACACACACACACACACACACACATATACACACATGCCTTTAATCCTGGCACTTGGGAGGCACAAAAGCAGATCCCTGAGTTCCAGGCCAGTCTGGTCTTCTAAGGAAGTTCCAGGACAGTCTGAGTTACATAGAGAAACCCTGTCTTAGACAGAAAAAAAAATAGGCTAGACTGTCCTTTGACCTTGCAGACATATCCATCTGCAGCTCCCAAGCCTGATTCTCACTTTAG
Seq C2 exon
GTGAGGAAGATCCCTCGCAAGAGAACATCCCTGACAGACAGCTACGTGGACCAGACCTCCTCAGGTTCTGTCTTCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650:ENSRNOT00000071233:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]