MmuINT0166951 @ mm9
Intron Retention
Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32627630-32629328:-
Coord C1 exon
chr2:32629185-32629328
Coord A exon
chr2:32627731-32629184
Coord C2 exon
chr2:32627630-32627730
Length
1454 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
TGACAGCCGTGTCTCCTCAGGGT
3' ss Score
7.83
Exon sequences
Seq C1 exon
GTAGACTTCTATGTATTCCGTGCTGAGGCCTTCATCCAACTCTGTGACTTCTCCTCTGCCCTCCAGAACCTCCGCAGGGCCTACTCCTATGACCCAGGGAATAACAAGTACCTGAACCGGCTGGCCTTTGTGCTCTACCTACAG
Seq A exon
GTGCCTCAGCTGCCCCACCCGCAGGGGACTTCTCACCTTATCCCCAGCTACTGGCTTGCCCTTCACCTACAGGGAGCCTTCCTGGGATAGGATCTGAGTTCTTGGGGACTCCCGGTCTGTGCACCTGTTTACACCAGCTGCCCCCATCGCTGATTTATTAATTTAGCTGGAGGTGTCTAGAACTTCTGCAGTAAGGCTCTGACCTACCCACACTATCCAATAGGGTCACCACTGGCCACATGGAAATGTTGAGTCCTTACAGTGTGGCAAGTATGACTGAACTAAATTTTAAATTCGATTTGGGTGGGTTGGGTCCGTAAGGGGTGTGACTCAGTGGTAGGATGGCAGCTTGGCACACAGAGGGCTCTGAGTGCTGTCCCTAGTACTAAGTGGAATTTTAACTGCTTAACATTTATTTTGACATTGACTTGAGCATGTGTGCTTGTGTGTATGTGTGCATCTGTGTGCCTAGGGAGGTCAGAAGTCAGATGTCTCCTTGTACTATGTGGGTGGGCCCTGGGCATCGGCAGGCCTGATGATGAAGTGCCTGTACCCACTGAGTCATCTCAGTACCGTCAGTGTCTTTTGAAAGTTCTTTTGAAAGTCAGATATTGGCTAGAAGTTGAGTTGAGTGCAACAGTGGTAGACCATTTGCCTAGGAAAGGGTCTGAGTCCAAGCACCAGTGCCACAAAACACCAAGCCCCTCAGTTCCTACAAAGAAGCTTGGGTGGCCAGTGACACGACTGAGCAGGTAAGAGCATCTGCTTCTTAAGCCTGACTACCTCCGTGTGATAGCTGAGATGCACACGGTGGGAAGAAACCAGACTGCCACAGTTAGCTATGACTTTCACACGTGTGCTGCGGCATGTGCCTGCCCCCACACACCACAGAATAAATGCACATCATAAAAAAGAAACATTGGGCCAGACATGGTGGCTCAGGCTTGCACACTCTGCACACCAGAAACTGAGGCAGGAAGAGTCTCATGAGTTCAAGGTCTGTCTGGGTTGCATGGTTCCCGGCCAGTATGAGTTACACTGTGAAACGTTAATAAGACAAATATACCAGACAAGGCAGGAGAGCCCTCGAGGCATTCAGATAACTGATAGAACTGTTGAGGGCCTGTGTCGTGCTAGCTCACTTCCTGTGTGACCTGTGGCGAGTCACTTCACCTCCCTGATCCTGGGTTCCTTCATCTGAAATGGGGAACACTTGTGAATTCTAGACCTTTGGCCGGAGCCCCGCTGCCCTCACCTGTTGCCCCATTCTGTCTGGAATCTCTGTGTTGCTGTATTCCTCCACGTTTCTTGGTGTCTCTCTGCTCTGTATCTTGTTTCCATCTCTGTCTCTTGAAGTCTCTGTCTCTGTTCAAGTCCCTCTCCCTGTCCTCTGCCACCTGTGGAGGTCATCAGAGCTGGAGTTCTGAGCGGAGCTGACAGCCGTGTCTCCTCAG
Seq C2 exon
GGTCAGTGCCTGTATGAGCTGTGTGACTTCCAGGAAGCCCTCTGTGTCTTCCTGCAAGCCTCCGACCTCCAGCCCCAAAACGCTTCCTTCAGTTACCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021-Ttc16:NM_177384:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(45.6=64.6),PF134141=TPR_11=PU(13.4=18.8)
A:
NA
C2:
PF134141=TPR_11=FE(49.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATGTATTCCGTGCTGAGGC
R:
CATCGGTAACTGAAGGAAGCGT
Band lengths:
238-1692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: