MmuINT0168873 @ mm9
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107880796-107881112:+
Coord C1 exon
chr9:107880796-107880876
Coord A exon
chr9:107880877-107880956
Coord C2 exon
chr9:107880957-107881112
Length
80 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
AAGACTGTTTCTGTCACCAGGTG
3' ss Score
8.51
Exon sequences
Seq C1 exon
AGAAACTGCCGATACGATGGGCAAATTGCTGTGTTTGGAACTGATCTTCAAGAGAAACTGAGTGACCAACACTACCTCTTG
Seq A exon
GTGAGCTGGGGGATGCTAGTGGGGAATGTCTTTGGGAAATCCACACCACATGCTCTGGCTAAGACTGTTTCTGTCACCAG
Seq C2 exon
GTGGGTGCTGGTGCCATTGGCTGTGAGATGCTCAAAGTCTTTGCCCTAGTGGGCCTCGGAGTTAGGGCGAATGGAGGTGTGACTGTTGCTGACATGGATTACATAGAACGCTCCAACCTCAGCAGGCAGTTCCTCTTCAGGCCCAAGGATGTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-Uba7:NM_023738:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
NA
C2:
PF0089916=ThiF=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACTGCCGATACGATGGG
R:
AACAGTCACACCTCCATTCGC
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: