RnoINT0159024 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116757082-116757397:+
Coord C1 exon
chr8:116757082-116757162
Coord A exon
chr8:116757163-116757241
Coord C2 exon
chr8:116757242-116757397
Length
79 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
AAGATTCCTCCTGCCAGCAGGTA
3' ss Score
5.39
Exon sequences
Seq C1 exon
AGAAACTGCCGATACGACGGGCAAATTGCTGTGTTCGGGACTGGTTTTCAGGAGAAACTGAGCTACAAACACTACCTCTTG
Seq A exon
GTGAGCTGAGGGACGATCGTGGGGAAGTCTTTGGGAAATCCATGCTATGTGCTCTGGCTAAGATTCCTCCTGCCAGCAG
Seq C2 exon
GTAGGTGCTGGTGCCATTGGCTGTGAGATGCTCAAAGGTTTTGCCCTAGTGGGCCTGGGAGTTAGGGATAATGGCGGTGTGACAATTGCTGACATGGACCACGTAGAACGCTCCAACCTCAGCCGGCAGTTCCTCTTCAGGCCCAAGGACACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
NA
C2:
PF0089916=ThiF=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATTGCTGTGTTCGGGAC
R:
GAGGTTGGAGCGTTCTACGTG
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]