MmuINT0168881 @ mm10
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107980877-107981296:+
Coord C1 exon
chr9:107980877-107980959
Coord A exon
chr9:107980960-107981203
Coord C2 exon
chr9:107981204-107981296
Length
244 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTGTGATCTGGGCCTGGCAGGAT
3' ss Score
5.6
Exon sequences
Seq C1 exon
GCCAGGAACAGTTGAAGGAACTGCAGGAAACCCTGGACGACTGGAGGAAGGGGCCCCCGCTGAAGCCTGTGCTGTTTGTGAAG
Seq A exon
GTGGGGTCCCAAGATGGGGTGAAGAACTGGGCTGGTGGGGAGGTAAGGAAGCAGGGGAGTTTGAGAACCGTCAAGGCTGTGGAAGCAGCTCACACCCCTCGCATCTCGGCCACACTGTGTGGCAAAGGCGGGAGATGGTGGCTACCCAACCACAAAACTGTCCAGACACCTGTCAGTGGCCTGCAGGTGGCCATGCTGAGGGATACCACTGCAGTGTGACACTCCTGTGATCTGGGCCTGGCAG
Seq C2 exon
GATGATGACAGCAACTTCCATGTGGACTTTGTGGTAGCAGCGACAGACCTGCGATGTCAGAACTACGGGATCCTACCAGTTAATCATGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596:ENSMUST00000035216:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(4.3=10.7)
A:
NA
C2:
PF0213416=UBACT=FE(43.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGAACAGTTGAAGGAACT
R:
CCGAGCATGATTAACTGGTAGGA
Band lengths:
176-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types