RnoINT0159031 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116759695-116760121:+
Coord C1 exon
chr8:116759695-116759777
Coord A exon
chr8:116759778-116760028
Coord C2 exon
chr8:116760029-116760121
Length
251 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTGTGATCTGGGTCTGGCAGGAT
3' ss Score
5.95
Exon sequences
Seq C1 exon
GCCAGGAACAGTTGAAGGAACTGCAGGAAACCCTGGATGACTGGAACAAGGGGCCTCCACTGAAGCCTGTGCTGTTTGGGAAG
Seq A exon
GTGGGGTCCCAAGATGGGAACTGGGCTCGGGGGAGGTGAGGAAGCAGGGTGGTTTGAAAACCTGGCTTTCCAACCATCAAGGCTGTGGAAGCAGCTCAGTCCCCTTGCACGTCGGTCACACTGTGTGGCAAAGGAGGGAGATGATGGATACCCTACCTGAAAACTGTACAGAGACCTGCCAGTGCCCTGCAGGTGGCCACGCTGAGGGATGCCATTGCAGTGTTGACACTCCTGTGATCTGGGTCTGGCAG
Seq C2 exon
GATGACAGCAGCAACTTCCACGAGGACTTTGTAGTAGCAGCGACAGACCTGCGCTGTCAGAACTATGGGATCCTGCCAGTTAACCGTGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(4.3=10.7)
A:
NA
C2:
PF0213416=UBACT=FE(43.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGAACAGTTGAAGGAACT
R:
GCACGGTTAACTGGCAGGATC
Band lengths:
172-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]