MmuINT0172692 @ mm9
Intron Retention
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27141959-27144212:-
Coord C1 exon
chr2:27144126-27144212
Coord A exon
chr2:27142045-27144125
Coord C2 exon
chr2:27141959-27142044
Length
2081 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
AACAGTCCTTGCCTTTCCAGCAA
3' ss Score
7.7
Exon sequences
Seq C1 exon
GACTTGGCCATGTACATCAATGAAGTGAAGCGGGACAAGGAGACCTTGAAGAAGATTAGCGAGTTCCAGTGCTCCATAGAAAACCTG
Seq A exon
GTAAGCCGTGGCTGCCTGCGAAGCCTGCCGGGAGTAGGAGGGAGGTCGGGCAGTATCAGCCTTCATCCAGTTCTACCTACTGTGCGGATGAGGTCATCCACGTGTAGGGCTCAGGAGATGGATGTCCTATTGACAGCCTGGCTCTCTTTCTCCCTTCCCAGCCTGAACCCCAGGCTGTGGCGACCAGAGGCAGGACGCTTCGTCTGCTCTGTGGCCCTCCTGTTTCCCTGTCCTCAGGGTGGGCAGTGGGCAGGGTTCGGCTTGGGGGTGGGGCCACGGTCATCTCAACCTGAGAGCTGGCCCTCAGCTTGCCCCTTGTCTAGGAATCAGACTGGGGGCTGTCAGTCAGGGTTGGCCCTCTCTCAGGCATACTCCGGGGAGAAGAGATGAGCTGTTCCTGGACTCAGCCCTGCTTGGCCCCATGTTGGGTCTAGGTCTCTCTGTGTTGGGGTGTTCTGCAATAGGAGACCTTAAGCACGCCCTTGCCCCCACCCATCGGATGCTAATAGCGCCCTCAACCCCAAGTGATGACTGCTCCTCCAAATGCCGTCTGATTCCCAGAGTCATTTTGATATTGAACCATTGATTTTTTTCCCCGCTCAAACATCCCCTCTTCTTGGAGATTTTCCTGGAGAGCTTGGCGAAGTAGAAACCTGGAAGCCCGATATCTAGGCTGGCATACCCATCTTCATCTCCAGAGGAACCCTCTACAGAGCTGGCTGGCTCATCAGAGGGCAAGGAGAACTGCCAAGCAGTGTCTGATGAGTGCTCTGTCTACATGTGTGCTTGCACGCCAGAAGAGGGCGTCAGACCCGGGACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATCAAACTCAGAGCCTCTTAACCGCTGGGCCATCTCTCCAGCCCATTCTTATGTGTCATGAGTGTGACCTGAAGCATGAACATTTGTGGGGTTCAGACCATTTGCCAGTCATCCCTGCTTTCTGATCACTGCACAGTTAACACACTGCTTTTGAACACAGGGGAGTTTGCTTTGGTGTTGTGAGTCATGTTTGCTCTTTAAATGACAAGGAATGGGATGTGAGTGTGGTTTAGTTGGCAGAGTGCTTGCCTTTCATGCACAGGGCCCTGAGTAAACTGGACTCAGGGGCACTAACTGTAATCCAGCATCGGGGGCAGGGGAGGAGGAAGGCGGAGGCAGGAGGATCAGCGTTGTCTTTGGCCACACAGCATCCAGGCCAGTGTGGGATACTCCAGGCCCTATCTCACAAAGAACGGTGATCCATGGATCTCGGTGTTTCTGGTATATGACAGCCAAGCTGCATGCAGTCTTGGTGCTGTCTCTAGGAGAAGGCACCTGGATTTATATGTCCTGTGTGATGGGGACAAAGGGGCATAGCAGAGTCCCCGAGCAGATGTGAATCATGCTCTGTGTCAGGCCAAGGCCAGCCTCTGTCATACTGAAGTCAGACCTAGGAGTTTTCACAGAGTACAGGGACCAGGCCTCCAGGCCCATGTGACCACCCACAGGCATAGCCACTTCCCCTGGAACCCGACCTCTGCCTTCTCCTGAATAGACTTGTCCCTTGAAGAGGATACAGAGGACAGTGGAAAGGCAGATCTCTCTGTATTAAACAGAACAGAGAGGCACAGTCCAAGCAGAAGCGGAAATGGAGACTTGATGGCCAGTGGTGGCGGGGCTGGGCATAGATTGCTTTCTGTGGAGGATGAACCCGGCTGGACCCCGCCTGTGGTTGCCGCTCAGTCCAGTGGTGCTGCTTGCTTGCTTTATTTGCTCTCTTAGGGCTGGACCTCTGGCTTTTCCTACAGCTCCGGGTTCCACACAAGGGCCGCCTGTGAGCATGACCAGACCATCAATTGCCCTTTGTTCCCAGGGCTCAAGGGAGTCCCCATTGTGGCCCCCTGAGAGGGGACAGGCTTGGCTCATTCATGGGCTACCCAGTCACCGTAGGCACATTTTCCTAGATCACACCTGGGTCTTTCTGTCCTGCCCTGGGCATGCCTACTTTTCTCCCTGTCTAGCAATGCAGAGGTTGTCCACCCTTGGACTAACAGTCCTTGCCTTTCCAG
Seq C2 exon
CAAGTGAAGCTGGAGGAATTTGGGAGGCCAAAGATTGACGGGGAGCTTAAAGTCCGGTCCATAGTCAACCACACCAAGCAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621-Vav2:NM_009500:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(4.0=24.1),PF084296=PLU-1=FE(17.9=100)
A:
NA
C2:
PF084296=PLU-1=PD(10.9=58.6),PF0016924=PH=PU(18.6=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: