DreINT0173555 @ danRer10
Intron Retention
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:18006853-18007814:-
Coord C1 exon
chr21:18007728-18007814
Coord A exon
chr21:18006939-18007727
Coord C2 exon
chr21:18006853-18006938
Length
789 bp
Sequences
Splice sites
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
3' ss Seq
ATTTTGTGTGTCATTTACAGCAG
3' ss Score
9.09
Exon sequences
Seq C1 exon
GACCTGGCCATGTATATCAATGAGGTGAAGAGAGACAATGAAACCCTGAAGAAAATAAGTGAATTTCAGAGCTCTATAGAAAATCTA
Seq A exon
GTGAGTGTTTGTGGAGATCATAATCAATGCAGTAAATGCAGCATAACAGTGTACTTCATCACCTGTAGTATTAATGACTCTTTTTGCCTAATATGTTAATGCTTTATATATTGCATGTGTATTTATTTCCACTTGTCATGCTTATTCAATGGCCTGTTGATTTTTATATCACTTCACATTACCTTAACAAATCTAGTTGCACTCCTTTGCTGTCACTTGAAAGACTTACAATGTCTGAGTTCAAGCACATATCAGCATGCTGGCCAATTCCTCTTTATCCCCAAACATTTAGTTGTTTACAAGCCTCCACCTGCCCCCCGTCTGTCACTTCTGTTCAGTAAAATAAATCCCAAAAAGCCTCCAGGCCACAAGCACAGGCAGGCACACTTAGGACTGTGTTTAAAAGGAATGAAATCAGTGTATCCTCTTCCAGTAGCTAATATAAGAGTCAGTGTATCAGCTCTGGTTTATTTATGTGAGGGCCTGTGGTGCAGATGACGCCTGCGGCTAAACATCAATGAGCCAATGAGGCATGCCACTTACGGACAAAGACCTGCACTGTGGGCTTTGCCGTGCCTTTAATGACTCTTAATAAAGCAGCATGTGTACTATTTTGTAACAAAAACATGAGGCATAAATCTGTAATTGGTATATAAATATTAGAGAAATGTCCTTAAGGTAACACAATATGGCTATTGCAAGCAAGAAGGTCATCCATTGTGCATGAAACTCCTGAGGCCTTTATGCTAATATAAATGTATGGATTATAATTTTGTGTGTCATTTACAG
Seq C2 exon
CAGGTTAAGCTAGAGGAGTACGGTAGGCCAAAGATAGACGGAGAGCTCAAAGTGTGCTCTATAGTAAACCGGACCAAACAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718:ENSDART00000143987:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(4.0=24.1)
A:
NA
C2:
PF0016924=PH=PU(17.8=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]