BtaINT0159561 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35653964-35657343:+
Coord C1 exon
chr3:35653964-35654050
Coord A exon
chr3:35654051-35657257
Coord C2 exon
chr3:35657258-35657343
Length
3207 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
ATGTACATTTTCTATTTTAGAAC
3' ss Score
10.6
Exon sequences
Seq C1 exon
GACTTGGCACAATATGTGAATGAAGTGAAAAGAGATAATGAGACCCTTCGTGAAATTAAACAGTTTCAGCTATCTATAGAAAATTTG
Seq A exon
GTATGTAATTATCATTCCATCCAGCTTCTCTAACCCACAGCTTGGGGGACATTCTAGGAGTTGTTTTTGAAGAAAAAATAATTTACCTTCAAGTTTCTGTTATTCTAGGTTTTTTCTGACTTCTGTTTGACAGAGTCCACAGGGATGAATGTTCAGTGGCATCTGTGACACATTGCTCTCCAGGGACCTTCTGCCATCGCTTGTCCCTAATCACATTGTGATACCTCTGCCCCTAGTAGTCCCAACTCTAAACACTGGATCCATTTTTTTCTCTTCTTATCCTCACCCCCATACATACTCATGGTAGAGCCCTGTTAATATATTCATTTTATGTATAGTTACTGGGTGACTGCTGTGTGCCAGATGTTTTGCTTGGGGCTGGGGCTATAACCATGAGCAACATGATCTCATGGGTGAAGAGACAGTAAAAAGAGTTTAAAACTGCTCTATTGAGATGAATGCTGTGAACAGGTTGCTGCAACAGAGGCTAGTGAGGGGAGTCCTAGTTTAGATAAGATGCTCAGGAAAAGGCCTTCTGAGGCATTTCTCATTTGAGCATGAAGGATGAGAAGAAGCCAGTGGCATGAAGGTCTGTACAGAGAGGATTCCAGGCAGGAGCCATAGCAAGTGAAATGCCCAGAAATGGGCAAGAGCCAGGAGACTTTCCTGGTGATCCAGTGGTTAAGACTCTGTGCTTCCACTGGAGAGGGTACGGGTTCAGTCCTTCAGTACAGGGGGTGGGGAACTAAGACCCCACATGCTGTATGGCGTAGCCAAAAAGTAAAAATTACAAAAAAGAAGCTGCTGCAAGACAAGAGAGGCTGGAAATTGAGAGTGAAAGGAAGAAGGATGGGCCCTGAAGTGACGGAGGAGGACCGGAGAACTGTACCCCGCAGCCTTGGAGGACAAGGCTCTGAGGGATTGCAGCAGGAAGCTAGTGAAAGGCTCTTACCAGAGGGTTTTGCAGTCTGATTTATGTGTCAAGAAAACTCTTTCATCAGGCAGACCAGTCAGCAAGTTGTTGAGGTGGTTTCAAGAGAGAGATGATGGAAGTCTGGTTAAGGCTGTGGGTAGAGAAAACAGATAAATGAGTGGATTTAAGATACGTTCCTTGGTGGGGCAGTTTTATTGCTTCTTTCTCTGAAACAGCTTTGGTCTGTGTCGGTCTTTCCACACGTACAGCCCTTTCCCCTTTTCAGGACTCCATCTGCCACCTTTCCAATCACAGTAGCCTCTAACTACCTCTTCACATAGCTGTGTTTCCAAAACGTGGATTTCTCCATTCGCTTGCTTTCCCAAACTTGTCAGGATTTTGTTACCTTCAGGATTCAGTCAACATTCCTTAACATGGATATTTAAGGTCCTCAATGATTTGGCCTTAATCTGTATTCCTAAACTTATCCAGCTAATAACGGCCCACATACTTTACGTTCCAGCTGTCCTGCTGCATTTTAAGGTCTCCGATTTGCCCTGCCTTGTTTTTGGTTTCGTTTCTTGTGTGTGTGGTGGCACGGCATGTGGGATCTTATTAATAGTTCCCGACCAGGAATTGAACTTCTGCCACCTGTATTGGAAGGGTGGAGTCTTAACCATTGGACTGCCTGAGAAATCCCTGCCATACATTGTTATAGTCAGGCCTTTATTATAATGTTGTCAAAGCCCAGAATATCTTTTTTCGTAATTTCCTATCAAATTTCTTTGATGTCCAATTAAAAAAAAAAAAAAGATTCTCTCCCTAATCTGCCATTTCCCCCTTTCTTTGTAATTCTATAGCACATTGCCCAGATAGCTGTTTTCATTGTGGTAAAATATATTAAATTTGCCCTTTTAAATTGTACACTAGTTCTTCATCCTGCCTTCTTCCCAGCCCCAGGCAACCACCATTCTACGTTCTGTCTTTATGAATTATTGGATATTAAACTCATCACAGTTTTGTTTGTAAATATTTTCTCCCATTCTGTGGGTTGCCTTTTTACTCTGTTAATAGTGTTGTTTGCACAAAATTTTAAAGTTTGATGAAGTCCACCTTTCCTTTTGTTGCCTGTGCCTCTGGTGTCCTAAGAAGTTGTTACTAAATCCAATGTCATAAACCTTTTCCTCTATGTTTTCTTCTTTAAGTCTTGTATTTTTAGCTCTTTGATTCATTTTGAGTTAGCTTTTGAAAACAGTATAAGGGCCTGACTCCATTCTTCTGCCTGTGTATATCCAGTTTCCCCAGCACTATTCGTTGAAAAGGCTCTCCTATCCCCCACCAAATGGTGTTGGCACTTTGGTCAAAAATCATTTGACCTTTATATGAGGCCTTATTTCTGGACGTTCTGTTGTATTACATTGGTTTAGATGTCTGTGTTTAGGCCAGTTCCACACTGTTTGGATTACCATAGTTTTGTAGTAAGTTTTGAAATCAGGAAGTATGAGACCCTAACTTTGACCTTTTTTATGATTGTCTTACCTATTAGGAAGCATTAATCTTTATACTTTTTTGTAGTACAGTTAATTACATATCTTTTTTATTAGAATGTAATCTCATCGATGTTATTGATATTTTCAGTCAGTTCTTTTATCCTTTAGCATCTTGTAGATTAGGTGCTCATAAATACTTAAAACTTCTTATTGTCTGCCTATTGGGAAATGGCTTATTATTTTAAATCATTAAGTCAGGACTTTTCATTTTTGAGATCTTAGCCTCAAGGAAGCCATCCTTGACTCCCTAGACCAAATTAGGTCCTCCAGCTATGCATGCTTCTGCTCTTCCTTCATGCAATCACACGTTTGTGATTATATACTTGGGTGAATATTTGTCACCCCGTGGGCAGTATGTTTCATGAGGGCAGGGTCTATACCATTCTGTCCTGTACGTATTCCATTCCACTGGCTAGCCCACAGTGGATGCTCAGGAAGTATCAGTTGTAACTTTCTTGTGATTTGCATTATTCCAGTTAATCCTCTCTTTTGGTAGCTAACTTCTCTATCAGGGTTGTAAGTAAAATTAATTAATGTCTTCAGTATGCCTGCTGGGATGAACATGGACAGGTTGTTTTTGAACGTATATCATACAGACCTGAGCTTTTTAGAGTAAATGTGCTCAAAAGGTCAAATGATAAAATTTGCTCTAAGGAAGTTGTGCCTAGAAAATATCCTCACTAATATTTATTTCTGTCTTTATGTGATTATGAAAAACTGAGACATGTACATTTTCTATTTTAG
Seq C2 exon
AACCAACCCGTTTTGCTTTTTGGACGACCTCAGGGAGATGGTGAAATTCGAATAACCACTCTAGACAAACATACAAAACAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575:ENSBTAT00000020771:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(4.0=24.1)
A:
NA
C2:
PF0016924=PH=PU(17.8=62.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]