GgaINT0039979 @ galGal4
Intron Retention
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:1063884-1065058:-
Coord C1 exon
chr8:1064972-1065058
Coord A exon
chr8:1063970-1064971
Coord C2 exon
chr8:1063884-1063969
Length
1002 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
CAAGTGTGTTTCTGTTTCAGAAC
3' ss Score
10.37
Exon sequences
Seq C1 exon
GACTTGGCTCAGTATGTAAATGAAGTGAAGAGAGATAATGAAACACTCCGTGAAATTAGACAATTTCAACTATCAATAGAGAATTTG
Seq A exon
GTATGTGATAGTTTTAGCTTAAACAGTTCTTAGTAACTTTTGATCAAATGCAATGATGTATGTGTATTTTTCTTCCTGTTATATGCGAAGATAGTAAGAATTCTTGATGAAAGTAATGTGCAAGTATGACTTGCTTGGTCTAGAATGATAGAATGATGATTTACTTGCAGAGATATCTGCTAAAATTCTGTCAATCCCTGCTAGGGGTCTATATGTATTTACAAATATTTGTATAGATAAACGTTTGTATTTGTACAATGATTCCGGTGATTTTGTAATGCAAAAAATTGTCTGAAGACAAATGTAGAACAATTTGATGCCTTACTGTATGTAGGTTGCTCTTCAAGTAGTGCCTCCTATTTATTTCCCTGGAAACTACAACAGGGGTGAGGAGTACAATAGCACTGCTGGATAGAGCAAATTCTCAGCAACAAAATACTCTTTTTTTCAATGTGGTTAACACTATTAGCTATGCATTTTAACAGGCGATAAAGAAAAGTCTGCATGCTGTGCTCAAAAACGTATGGATGGCTGTCCGTAACTTGGCTTGTCTTTCACTGTTGCAATTGCTGAAATGCACCACCCATCAACTCACTGTGCTCACATGCACTGTTTGGTCCTCATAAGCGTTCGGCAAGCATCACTGAATGTCAATGGGTGCCATTTTTTCTTCATGGAGGAATTCAGTGGCACACCTTGACCTCCCACGTGCTTTCATGTCTGACTCCATTTTGTCAGACTGCCCCTCTGCTGCCACCAGTTCCAAAGCAACAAAATGTAATGGAATACTAGTGGGAGGGTTTGACCTCCAACATCTGCCTCTTGTGTGACTGGCCAACATAATAAAATAAGAGGCATTACTCTGGGAGTGGTCTTTGTAGTTAGTTTAAATTACAGTGACCTGAAAAGCCCCTTTTGGGATAAAAGGAGTGAGTGATCTAACATTTGAGTGTGCTATCTTATCACTTTTGGTGTACTGAATCAAGTGTGTTTCTGTTTCAG
Seq C2 exon
AACCATTCTCTCTTACAGTATGGAAGACCTCAGGGTGATGGGGAGATAAGAATAACTACGTTAGACAAACGTGCAAGGCAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915:ENSGALT00000002946:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(4.0=24.1),PF0063014=Filamin=PU(5.7=69.0)
A:
NA
C2:
PF0063014=Filamin=FE(8.0=100),PF0016924=PH=PU(18.6=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]