MmuINT0172719 @ mm10
Intron Retention
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109521441-109525954:+
Coord C1 exon
chr3:109521441-109521527
Coord A exon
chr3:109521528-109525868
Coord C2 exon
chr3:109525869-109525954
Length
4341 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
AAGGTGTATCTATGTTTTAGAAC
3' ss Score
7
Exon sequences
Seq C1 exon
GACTTGGCACAATATGTGAATGAAGTAAAAAGAGATAATGAGACCCTTCGTGAAATTAAGCAGTTTCAGCTATCTATAGAGAATTTG
Seq A exon
GTATGTAATTATCCCCCGATCCAGCTTCCCCTCGTCCCCAAATCTCGGGACATCCAAGAGCTGTTGTTGAGGAAAAGACAGTTTACCTTCGACTCTCAGCTGTTAAATGTTGTCTTCTCCCCTCCCATTTCTGTCTGGCCTTCACATTCATGTGATGTCTTCTGTGACTTTGCCATTGTCCAGGTACCTCTGCTGCTTGCTTCTCTCCCTCAGTCTCTTACTGCCTCCTCTCCCAAGGGTCTCAGAGAACAATAGAGTCCCAGTTTTGGTAGCATGGCTGGAAAAAGTCCTTCCAAGTCACTTGTCATTTTAACTGAGTCCAAAGAATGAGAAGCCAGAAGATCTGTGGTATTAGTGATCCAGACGATGCCTTAACAAGTGAAAAGTCCAGAGATGGGTAGGAAGTGGCAAGGCAAGGTTTGCTAGAAGTGGTGAGAACAGAAGGTGATGGGCTCTGCGGCCACAGGGGATGAAGGACTGCATCGCATAACCTTGTACGTCAAAGGTTGGTTAGAGCTTTATTGTGACTGCAACAGAGATCTAGGGCAGTTTCCATCTGTGAGTGTGTCCCAGTCTTGTTTATATTTCAAGAAGTCCCTTTAGAGGGGCAGCCAGGCAGCTATAGAAATGGTTTCCAGAGAGAACGGAGGGCTGGATTCGCCGGTGGGAAGTGCATAGAGAGAATGGCTTTGAGGTATTTTTGGCAACGTGATTTCACTGCTGTGCTCTGAATGCCCCTGTGCATTCCTTCCCTTTTCTACGTGCAGCCACCTCCCTGTTACACGGTGCCATCACCTGGGTCCTTGACAATCCCTGTAACCATATACACACACACACTCTTTATATAGTTATGCTTTAAATAGCAGTTTCCCAAGTCATCTTCTTTCCTAGACTTGCCAAGATTTTCCTGTTGTCTTCAGTGGTGATCCATTTAAAAGTCCTCAATGATCTGAACGTAACTGATTTTCAGAGCTCAGTGACTGACCACCCACATGTGCTACATCACTGGCATTATCCTACTTTTGCTCTCAGTCTCCAGAATTTTTTCTCGTGCTTCTACATTTGAAATTTGCCTACTTATGGCCCACAGTCTTTGTCTCCAGTGTGGTCTATCACATTCTTTCCAGGTCCAATCTAAAGAGAACCCCTTTCCCTAACCTCCTGTCATTCTTCCCTTTTTAGAATTCCACCATACATTTTCTATGGATGCATCTGCAGTGTAATAATATGAGTCACATTAAGTTGACCACCATAACACGTATGAATGCATATGACATTAAGCATATTTATAATCCTGTATACCCATTGCCTCCATACAACTCCCAAATTCTTCATCCCAAGAAAACGTGTTCACTGAGCACAGACCCCTCACTCTGTTCTCCCCACAGTCCCTGGCACCGTTCTTTCTGTGAATTCAGCCCGTTTGATGCCTCTGATTTACAGAACCACATGTTATAGGTGCCCTTCTGACTGGTCTATTTTATAAGCATTCATCCATGTTGCAGTGTGAGTTTTGTATACTTAAGGCTATGTGATGTACCACGCATTGTTTGTGCTACTCCACATCGTATCTTTTTATCCAGGGAACATTAGCTTGTTTCCCATTTCAAATATCATCCATGATGCTGCAGTGTGTGGGGCTGTGCCAATGTGTCTTTGAGTGCCCATTTTCATTTCTTTTGGTTGTATAGTAGGATTTCTGAACTGTGTGGCAATTCTGTGATTAAATTTTGAGTTATTTCCATTCCACTCCTGACAGCAGCTGCCCAGTTTGCATTCTTACTAGTGATATAAATGGATTCCAGTTTCTTCATGAGTTTGGCAAATGCCGATTTTCAGGTCTCTTTTTTAAAAATATTTTCTTTTGCAAAATATATATCCAAATGGGTGTGAGATGGTATCTGATTGTGGTTTTGATAAAATTCCCCTACTTGCTAATGGTGTTAAACTTTGTTTCATATGTTCACTGGACGTGTTTGGTTTGGAGAACTGTTCACTTGAATAACTTGGCTAATTTGAGTCCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGCACATGCACTCTCACATGTGTGGGTTTATAGGAGTTTATACATATATTCTCATCAGCCCATTATCAGGTATAATAGAGACTTTCTTCTGCAGACAGCGTTGGTGGCGCCATAAGTTCCAGGTTGCCCACCTTCAATTCCTTGCCTACACTTTTAATGTCACATCCAAGAACTCATTGTTAAATTTAATTCTATAAAAAGCTTTTTCTCTATTTTCTTCTAGAACCTTAATAGTGTCAGCTTTTATGTATAGATCTTTGCTCTACGTAGGTATTTTTAGATTCAGTATAAAGCTAAGGTCTAACTTTATTGTTCTTATTGTAGATATATAGTTTCCCTTGCACTCTTTGGATACTTTATTTCTCTGAATCGAATGTTCTTGGCACTTTTTGAAGACAGTTGTGGCTAATATATGAGCATGTTCCTAGAAATCACATTTGCCTCTTTTATTAGAATGAAATCCATAGGTATCATTGATAATCTTCCGTCAATTCTCTTTTCCTTAAAAAAATACTGTAAGTGTTCATTAATAGTTTAAACTATTTTGTGTTCCTGCCTTTGTGGAAATGTATCATTGAATTGTTACATCATAAAATTCCATCCTGGAACTCTTGGCTCAAGGAGGGAGCTTCAGGATCCCCTCTTCCTAGATTCTGCTTTTGGGACAATTATGTGTCTGCAGTTCCATGCTGCTGTGAACATTTGTGTCCTGTGTATGGTATGTTCTATGAACATAGAGGCTGCCTCACTCCACCTTGCATGCGTGACAAATATCACTTACTGTAATTTTCTTGTGATTAGTATCATTTCAGTGATTAGTATCATTTTTCCCCTTTAAATAATATTTTTATTTTTTTTGAGATTAAACTGTAATTGCATACATCATTTCTCCCTTTCCTTTATCCCTGTCAAACACTTCCCAGTAACCCATCCTGTTCTCTTTCAAATTCTTGACCTCCTTTTCTTCTTTAATTATTGTATGAATATATCTTGCTCAGTCTGTATAATGTTACTCTTATGTATATATTTTTAGGGCTGACTAGTAGTGAATAACCAATTTATGTGCTTTTAACCTAAAAAGGACTATTTCTCCTGGTCTCAGCATTTCTTAGTTGCCCGTAGTTGTGTTTTGTTTATTTGTTGTTGTTGTTTAGTCTTGGGACCTTGTGAGCGCTCCCCTTTCACATCAGCAGGTCTGTTTGTCTTGTTCAGCTCATGTTTAGGAAGACATGATGCTGAAACATCTCGGGTATAGCCTCTCTGATAATTTAGGAGACACAACCTCACAGCAAACCCACCATTCTTCTGATTTTTATAATCTTTCTGTCTCTTCTGCAATGGTTCCTTAGCCCAAGGCGCAGGAGTGTGTTGTAGTCAGATGAGTTGGGACTGTGCTCCACAGTTCTATGTTTTCACTGGCCGTGCCTCTCTGCAATGTCTCTGCTGCAAAGAGAACTTTTCCGGGTGAGGGATGAGGCGTACACTGATCTGTGAGTGTAAGGACATCTACCTAGAAGGCCGTAAGGGATTAAGCTGGTTTAGTACGGTAGTAGTTGCTAGTTCTCCTTCAACATCCATGGCTTTCCTACTCCGGGTACCTGGATCGATATCATTTTTATTTATTATAACACATTTACTCTCAACTGCACAGGACTTAGATACAAGGTAAGATTTAAAAATCAACCAGCCACTACTTCTACATAGAACCTTAAAAGGGAAGTGACCAGAGCTGGATCTGACCTGAAAGCCCCGCCCTCCTGAGGAACCAGGCATGATTTTTTTCTTGTTGAGCGGGCCTTAGGTCCTTTTAGAGAGCTCTTAGTTACTGACAAGCTATGTGAGCCAGTTCTTCCTGTATTCCTATGGCTATTGTGGCATGTTGGTTATTAACGTGGTTCATAGGCATCATTGTTGGCTAGACTATTGGTTGCTGCCTTCCTTTGGAGACTTGAACGATACCCTGTGGTACACAGAAGCTAGTCCTCAGGAGGGCGGGGCTTTCAGTTCAGATCCAGGTCTGCTCACTTCCTGTTTAAGGTTCTGTGTAGAAGTAGTGACTGGTTGATTTTCAAATCTTACCTTGTATCCAAGTCTTGTGCACTTAAGAGTGAATGTGTTAAAATAAATAAAAATGATATCAATTGCAACATGATAGGGCCATTGTCCTGGAGAATGTCTTTCCCGGTGTTTACTTCTGTTTTTATGTGATTGTGAAAGGGTTAGACACACACGTAAGATTTATTTAAAGGTGTATCTATGTTTTAG
Seq C2 exon
AACCAGCCAGTTTTGCTCTTTGGACGACCACAGGGAGACGGTGAAATCCGAATAACCACTCTGGACAAGCATACAAAACAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721:ENSMUST00000046864:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(4.0=24.1)
A:
NA
C2:
PF0016924=PH=PU(17.8=62.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types